BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0004.p
         (407 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large ...   736   0.0  

>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 994

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/392 (90%), Positives = 375/392 (95%), Gaps = 1/392 (0%)

Query: 1   VTKAFLAVNGGQGAASARVREMVEQLTTSVVSALVRRQPTGGTFHIEDIQDQVELALMRS 60
           VTKAFLAVNGGQGAASARVREMVEQLTT+VVSALVRRQPTGGTFHIEDIQDQVELALMRS
Sbjct: 61  VTKAFLAVNGGQGAASARVREMVEQLTTNVVSALVRRQPTGGTFHIEDIQDQVELALMRS 120

Query: 61  GEHDVARAYVLYRAKRMEERAQQQGSTAKTDFAAPQLHVVEDGQSRLLDLNEVRTLITAA 120
           GEHDVARAYVLYRAKRMEERAQQ G+  KT+  APQLHV EDGQSR LD+NEVR+LI AA
Sbjct: 121 GEHDVARAYVLYRAKRMEERAQQ-GAATKTEVVAPQLHVTEDGQSRPLDINEVRSLIAAA 179

Query: 121 CVGLEKHVDADAILAETVKNLYDGVPVEELHKSAILAARALMEKDPAYSQVTARLLMHTI 180
           CVGLE+HVD +AILAETVKNLYDGVPVEEL+KSAILAARALMEKDPAYSQVT+RLLMHTI
Sbjct: 180 CVGLEEHVDGEAILAETVKNLYDGVPVEELYKSAILAARALMEKDPAYSQVTSRLLMHTI 239

Query: 181 RKEVFGKEVAQADAPAEYLDYFAKYIKKGIAADLLDSKLAQFDLVKLAEAIKPERDLQFG 240
           RKEVFGKEVAQADAPAEYL+YF +Y+KKGI A+LLD+KLAQFDL KLA A+KPERDLQFG
Sbjct: 240 RKEVFGKEVAQADAPAEYLEYFPQYVKKGIEAELLDTKLAQFDLAKLAAALKPERDLQFG 299

Query: 241 YLGLQTLYDRYFLHIQGTRIEMPQAFYMRVAMGLSLNEIDREARTIEFYNLLSSFDFMSS 300
           Y+GLQTLYDRYFLHI GTRIEMPQAFYMRVAMGL+LNEIDRE R IEFY+LLSSFDFMSS
Sbjct: 300 YIGLQTLYDRYFLHIGGTRIEMPQAFYMRVAMGLALNEIDRETRAIEFYDLLSSFDFMSS 359

Query: 301 TPTLFNSGTLRSQLSSCYLTTVADDLDGIYEAIKENALLAKYAGGLGNDWTPVRSLGAHI 360
           TPTLFNSGT RSQLSSCYLTTVADDLDGIYEAIKENALLAK+AGGLGNDWTPVR+LGAHI
Sbjct: 360 TPTLFNSGTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKFAGGLGNDWTPVRALGAHI 419

Query: 361 KGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 392
           KGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG
Sbjct: 420 KGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKG 451


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,190,859
Number of extensions: 48012
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,207,925
Effective search space: 386536000
Effective search space used: 386536000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)