BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0003.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309720|ref|YP_003773812.1| anhydro-N-acetylmuramyl-tripept...   235   3e-63
gi|300309718|ref|YP_003773810.1| ABC transporter permease [Herba...   146   2e-36

>gi|300309720|ref|YP_003773812.1| anhydro-N-acetylmuramyl-tripeptide
           amidase [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score =  235 bits (600), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 125/149 (83%)

Query: 91  EGVAAELLVIHNISLPPGQFGGPFIGDLFCNRLDCDAHPYFDQLRPLRVSAHFVIQRDGS 150
           EGV ++LLVIHNISLPPG+FGG +I DLFCNRLD DAHPYFDQLRPLRVSAHF+I+RDG 
Sbjct: 35  EGVVSQLLVIHNISLPPGEFGGSYIADLFCNRLDFDAHPYFDQLRPLRVSAHFLIRRDGE 94

Query: 151 LVQFVSANDRAWHAGVSSFHGRERCNDFSIGIELEGTDFEPFTDLQYEVLAALTDALRRH 210
           +VQFV A+ RAWHAGVSSF GRERCNDFSIGIELEGTDF PFT  QY+ L  L+ AL   
Sbjct: 95  VVQFVPAHRRAWHAGVSSFEGRERCNDFSIGIELEGTDFTPFTPAQYDALLGLSQALVSR 154

Query: 211 YPLTDVAGHEHIAPGRKTDPGPFFXSAKH 239
           Y L+ VAGHEHIAP RKTDPGPFF   ++
Sbjct: 155 YGLSAVAGHEHIAPLRKTDPGPFFDWQRY 183


>gi|300309718|ref|YP_003773810.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 89/131 (67%), Gaps = 7/131 (5%)

Query: 3   VAVILPSVFPGNMVELAGKSDWFLWHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPKM 62
           +AV+LPS+FPGNMV L GKSDWFL HIAISILAYSTLTIAAFHAVLMVLQESRLHTRP +
Sbjct: 93  LAVVLPSIFPGNMVALTGKSDWFLAHIAISILAYSTLTIAAFHAVLMVLQESRLHTRPGL 152

Query: 63  GTAQPGWFSIALDRLPALLTMEKIFFXAEGVAAELLVIHNISLPPGQFGGPFIGDLFCNR 122
            T Q GWF +ALDRLPALLTMEK+ F        LL +  +S      G  F   LF   
Sbjct: 153 AT-QSGWFGLALDRLPALLTMEKLLFRLIAFGFTLLTLTVLS------GVVFSEQLFGTP 205

Query: 123 LDCDAHPYFDQ 133
           L  D    F  
Sbjct: 206 LKWDHKTIFTM 216


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,035,622
Number of extensions: 41702
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)