BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0017.p (393 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Her... 582 e-167 gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Her... 345 4e-96 gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Her... 281 6e-77 >gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 582 bits (1501), Expect = e-167, Method: Compositional matrix adjust. Identities = 281/318 (88%), Positives = 301/318 (94%) Query: 1 VPIRALILTPTRELAAQVEESVRVYGKYLPLTSACIFGGVGINPQIRLLKQGVDILVATP 60 VPIRALIL PTRELAAQVEESVR YGKYLPLTSACIFGGVGINPQI LLK+GVDILVATP Sbjct: 75 VPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQITLLKRGVDILVATP 134 Query: 61 GRLLDHMQQNTVDLRNVQVLILDEADRMLDMGFIRDIKKILAVLPKKRQNLLFSATFSDE 120 GRLLDHMQQ TV+L+++Q+L+LDEADRMLDMGFIRDI+K+LA LP KRQNLLFSATF+DE Sbjct: 135 GRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPPKRQNLLFSATFADE 194 Query: 121 IKALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPLLAHLIKTNQWNQVLVFTR 180 IK LAD LLN+PA+IEVARRNSTVEVI QKIHPVDRDKKHP+LAHLIKT+QW QVLVFTR Sbjct: 195 IKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHLIKTHQWKQVLVFTR 254 Query: 181 TKHGANKLVEQLARDEITAMAIHGNKSQAARTRALADFKDGKLQALIATDIAARGIDIDQ 240 TKHGANKLVEQL RD ITAMAIHGNKSQ+ART+ALA+FKDGKL ALIATDIAARGIDIDQ Sbjct: 255 TKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTALIATDIAARGIDIDQ 314 Query: 241 LPHVVNYDLPNVSEDYVHRIGRTGRAGATGSAVSLVCVDERDLLHDIERFIKREIPVEIV 300 LPHVVNYDLPNV EDYVHRIGRTGRAGATG AVSLVC+DERDLLHDIERFIKREIPVE++ Sbjct: 315 LPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDLLHDIERFIKREIPVEVI 374 Query: 301 PGFEPDPKAKPQPIQLRS 318 GFEPDP AKPQPIQLRS Sbjct: 375 AGFEPDPTAKPQPIQLRS 392 >gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 487 Score = 345 bits (884), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 176/368 (47%), Positives = 243/368 (66%), Gaps = 2/368 (0%) Query: 2 PIRALILTPTRELAAQVEESVRVYGKYLPLTSACIFGGVGINPQIRLLKQGVDILVATPG 61 P+RALILTPTRELA QV ++V Y ++ PL S +FGGV + PQ +L+ GV+I++ATPG Sbjct: 92 PVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTAILRAGVEIVIATPG 151 Query: 62 RLLDHMQQNTVDLRNVQVLILDEADRMLDMGFIRDIKKILAVLPKKRQNLLFSATFSDEI 121 RLLDH+QQ TV+L Q+L++DEADRMLDMGF+ D+++I+ +LPK+RQNLLFSATFS EI Sbjct: 152 RLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLLFSATFSPEI 211 Query: 122 KALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPLLAHLIKTNQWNQVLVFTRT 181 K LA N+P IEVAR N+T E + Q I+ V+ K ++ +I+ + QV+VF+ T Sbjct: 212 KKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFIIRQRELKQVIVFSNT 271 Query: 182 KHGANKLVEQLARDEITAMAIHGNKSQAARTRALADFKDGKLQALIATDIAARGIDIDQL 241 K GA++L L + + A AIHG+K+Q+ R AL FK G+++ L+ATD+AARG+DI +L Sbjct: 272 KIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLVATDVAARGLDIAEL 331 Query: 242 PHVVNYDLPNVSEDYVHRIGRTGRAGATGSAVSLVCVDERDLLHDIERFIKREIPVEIVP 301 P V+NYDLP +EDYVHRIGRTGRAGA+G A+SL C + LL DIE+ IK++ + Sbjct: 332 PCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLTDIEKLIKKKFERAELT 391 Query: 302 GFEPDPKAKPQPIQLRSEGHRGGGGGGRRPQGGGGGGNRSQQPKTGGQGQGQAQAAKPRQ 361 GF P+A+ + G R G G RS+ + GG + + P Sbjct: 392 GFA--PRARHERSDRAERGERSERGERSDRGDRSDRGERSRSSREGGAAPMRREKVDPWF 449 Query: 362 GGPAKPQG 369 P +P Sbjct: 450 LKPYEPSA 457 >gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 510 Score = 281 bits (720), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 151/335 (45%), Positives = 209/335 (62%), Gaps = 2/335 (0%) Query: 4 RALILTPTRELAAQVEESVRVYGKYLP-LTSACIFGGVGINPQIRLLKQGVDILVATPGR 62 + L+LTPTRELA QV + YG Y+ + I GG+ Q++LL + +ILVATPGR Sbjct: 98 KMLVLTPTRELALQVTTATDKYGAYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGR 157 Query: 63 LLDHMQQNTVDLRNVQVLILDEADRMLDMGFIRDIKKILAVLPKKRQNLLFSATFSDEIK 122 L+DHM+ +D +Q+L+LDEADRMLDMGFI DI+KI+A P RQ +LFSAT + Sbjct: 158 LIDHMESGKIDFSQLQILVLDEADRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVG 217 Query: 123 ALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDR-DKKHPLLAHLIKTNQWNQVLVFTRT 181 +A + N+P I++A ++ E I Q++H VD K+ LL HL++ +Q ++FT T Sbjct: 218 NMAKRITNNPLTIQIASSSTRHENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTAT 277 Query: 182 KHGANKLVEQLARDEITAMAIHGNKSQAARTRALADFKDGKLQALIATDIAARGIDIDQL 241 K A+ + ++L A A+HG+ Q AR R L + G+++ L+ATD+AARGID+ + Sbjct: 278 KRDADTIADRLNIAGFAAAALHGDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGI 337 Query: 242 PHVVNYDLPNVSEDYVHRIGRTGRAGATGSAVSLVCVDERDLLHDIERFIKREIPVEIVP 301 HV NYDLP +EDYVHRIGRTGRAG G A+SLV E + IERF K+ IPV++V Sbjct: 338 THVFNYDLPKFAEDYVHRIGRTGRAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVE 397 Query: 302 GFEPDPKAKPQPIQLRSEGHRGGGGGGRRPQGGGG 336 GFEP A P+ + G G P+ G G Sbjct: 398 GFEPKKSAAPRSPRKPGGWRPGDGRSNNGPRYGAG 432 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,008,372 Number of extensions: 36335 Number of successful extensions: 184 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 3 Length of query: 393 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 306 Effective length of database: 1,207,925 Effective search space: 369625050 Effective search space used: 369625050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)