BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0016.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311048|ref|YP_003775140.1| histone acetyltransferase HPA2 ...   223   4e-60

>gi|300311048|ref|YP_003775140.1| histone acetyltransferase HPA2
           protein [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  223 bits (569), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 104/158 (65%), Positives = 126/158 (79%)

Query: 2   IDVVKADLNNPRHGVAILEMLDAYASDLMGGGEGISDFVRTHLIDELRKRPAVHVFLAFD 61
           + V+KADL N  H  A+ E L+AYASD MGGG+ +SD+VR +L  EL+KRP  HVFLAFD
Sbjct: 3   VSVIKADLGNAAHAAALFETLNAYASDAMGGGKQLSDYVRENLAAELKKRPTAHVFLAFD 62

Query: 62  GEQAAGFANCIEGFSSFACKPLLNIHDFAVAPAYRGRGIAKQLMQAVDACARELGCCKIT 121
           G+  AG A CIEGFS+FAC PLLN+HD AV PAYRG+G+AKQL+ AV+  AR+LGCCK+T
Sbjct: 63  GDTPAGLATCIEGFSTFACHPLLNVHDLAVMPAYRGQGLAKQLLAAVEEEARKLGCCKLT 122

Query: 122 LEVLEGNTVARSLYASTGFVGYELNPSSGKAVFMHRLL 159
           LEVLEGNTVARSLY + GF GYEL   +GKA+FMH+ L
Sbjct: 123 LEVLEGNTVARSLYRACGFEGYELKAETGKAMFMHKPL 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 521,921
Number of extensions: 21212
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)