BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0015.p (180 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC tra... 268 2e-73 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 77 9e-16 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 70 1e-13 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 66 2e-12 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 64 9e-12 >gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 268 bits (686), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 142/229 (62%), Positives = 155/229 (67%), Gaps = 51/229 (22%) Query: 1 VIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLKKTVIMVSHDIDEAIKLGDQ 60 VIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQL KTVIMVSHDIDEAIKLGD+ Sbjct: 151 VIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLNKTVIMVSHDIDEAIKLGDK 210 Query: 61 VAIF-------------------------------------------------PXRPGLP 71 VA+F P + Sbjct: 211 VAVFRAGKLVQFDNPDTLLARPKDDFVSAFVGQDHTLKRLLLVRAGEAATTPPTAHPDVS 270 Query: 72 LQDAMNLMDDQDARYLTITDNDNRALGYISRRDIRSAGTQGVSGDKVRPFNLNAAPDENL 131 A+ LMDDQD+RYLTI D DNRALGY++RRD+R G+ GV+ DKVRPF +NA PDENL Sbjct: 271 CDQALALMDDQDSRYLTIIDADNRALGYLTRRDVR--GSTGVAEDKVRPFTMNADPDENL 328 Query: 132 RVVLSKMYKHSASWMPVIDAEGKYLGEVTQDSIADYLSSGKSRGQRMAA 180 RVVLSKMYKHS SWMPVI +G Y+GEVTQDSIA YLSSGKSRG MAA Sbjct: 329 RVVLSKMYKHSTSWMPVIANDGSYVGEVTQDSIASYLSSGKSRGMAMAA 377 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 77.0 bits (188), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 53/76 (69%) Query: 1 VIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLKKTVIMVSHDIDEAIKLGDQ 60 + R LA D+P++LMDEPFGA+D + R ++Q+E ++ + +KT++ V+H I+EAI L D+ Sbjct: 151 IARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYLADR 210 Query: 61 VAIFPXRPGLPLQDAM 76 + + RPG +D + Sbjct: 211 IVVMTYRPGTVKRDML 226 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 50/78 (64%) Query: 1 VIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLKKTVIMVSHDIDEAIKLGDQ 60 + RALA + VLLMDEPFGA+D + R +Q+E ++ + TV+MV+HD+DEA+ L D+ Sbjct: 155 IARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDEAVLLSDR 214 Query: 61 VAIFPXRPGLPLQDAMNL 78 + + P + + + + Sbjct: 215 IVMMTNGPAATIGEVLEV 232 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 1/86 (1%) Query: 3 RALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLKKTVIMVSHDIDEAIKLGDQVA 62 RA + LL+DEPFGA+D + R ++Q+ + RQ TV++V+HD+DEA+ L D++ Sbjct: 142 RAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLADRIF 201 Query: 63 IFPXRPGLPLQDAMNLMDDQDARYLT 88 +F RP L++ NL+ + L+ Sbjct: 202 VFSPRPAKVLKE-FNLVHHEKTHDLS 226 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 63.5 bits (153), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 42/67 (62%) Query: 3 RALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLKKTVIMVSHDIDEAIKLGDQVA 62 RALA + +LLMDEPFGA+D + RE +Q + + K V ++H I+EA+ LG +V Sbjct: 146 RALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEALFLGTEVI 205 Query: 63 IFPXRPG 69 + RPG Sbjct: 206 VMSPRPG 212 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 549,134 Number of extensions: 21148 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 14 Length of query: 180 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 101 Effective length of database: 1,245,805 Effective search space: 125826305 Effective search space used: 125826305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)