BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0011.p
         (148 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC tra...   207   4e-55
gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC tra...    91   3e-20

>gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  207 bits (526), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/139 (87%), Positives = 134/139 (96%)

Query: 9   ALAFFGIGNWPTILALWLASLLPIVRNTFEGLKNVPAPLREAAKGIGMKPYQVLLRVELP 68
           ALAFFGIGN PTILALWLASLLPIVRNT+EGLKNVPA ++EAA+GIGMKP+Q+LLRVELP
Sbjct: 97  ALAFFGIGNGPTILALWLASLLPIVRNTYEGLKNVPAAMKEAARGIGMKPHQILLRVELP 156

Query: 69  NALPIIVGGIRTALVINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLGSAATALLAL 128
           NALPIIVGG+RTAL INVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLG+AATALLAL
Sbjct: 157 NALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLGAAATALLAL 216

Query: 129 LLDAIVTLLSHWYLSRRGL 147
           +LDA+VT LS +YL+RRGL
Sbjct: 217 VLDALVTALSGFYLARRGL 235


>gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC
           transporters permease [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 91.3 bits (225), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 85/126 (67%)

Query: 14  GIGNWPTILALWLASLLPIVRNTFEGLKNVPAPLREAAKGIGMKPYQVLLRVELPNALPI 73
           GIG  P I A++L SLLPI+RNT+  L+N+ A ++EA  GIGM  +Q L  V+LP A+P+
Sbjct: 82  GIGPLPAITAVFLYSLLPIMRNTYLALENIEAGIKEAGIGIGMTFWQRLRMVDLPLAVPV 141

Query: 74  IVGGIRTALVINVGTAPLSMLIGGESLGGLIFPGIYLNNHGQLLLGSAATALLALLLDAI 133
           I+GG+RTA+V+N+G   ++ +IG   LG LI   I  +N  +L++G+   ++LA++ D +
Sbjct: 142 ILGGVRTAVVMNIGVMAIAAIIGAGGLGVLILHAISQSNMQKLVVGAVMISVLAIIADTL 201

Query: 134 VTLLSH 139
           +  L  
Sbjct: 202 LQRLQK 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.144    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 421,992
Number of extensions: 16508
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 3
Length of query: 148
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,255,275
Effective search space: 89124525
Effective search space used: 89124525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)