BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0006.p (278 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310273|ref|YP_003774365.1| AraC family transcription regul... 162 2e-41 gi|300310311|ref|YP_003774403.1| AraC family transcription regul... 159 2e-40 gi|300311011|ref|YP_003775103.1| AraC family transcription regul... 155 5e-39 gi|300313525|ref|YP_003777617.1| AraC family transcription regul... 137 7e-34 >gi|300310273|ref|YP_003774365.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 162 bits (411), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 129/239 (53%), Gaps = 3/239 (1%) Query: 15 PAAALAIDYPHGHVIEPHRHAYAQLLYAIEGVLVVETAAGRWVVPPTRGVWLQPEVDHQV 74 P ++ YP G V+ H+H L+YA G+L V+ +G+W+VPPT VWL+ V H + Sbjct: 24 PVFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSL 83 Query: 75 RMRGDVKMRTVFVNMQELPNLPQDNCVLDIPPLLRELIVAAVGIGPALASDSRDWHLLRL 134 M ++ +FV LP +CV+ + PLLRELI+ S R L L Sbjct: 84 AMPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGAL 143 Query: 135 LVHELRSVPVLPLYLPLP---ADRGLRVICEALMAQPDDDATVDMHAQQLGIATRTFHRL 191 ++ E+ + P LP +LP P D + +C+AL+ P D AT A +L + +TFHR Sbjct: 144 VMEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRR 203 Query: 192 FLRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMFKKHFGIAPS 250 FL+ TGM F WRQQ RL+ +L L +G I VAL GY S SA+ F K FG PS Sbjct: 204 FLQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPS 262 >gi|300310311|ref|YP_003774403.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 159 bits (402), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 145/258 (56%), Gaps = 3/258 (1%) Query: 2 DTSNYHHMINANAPAAALAIDYPHGHVIEPHRHAYAQLLYAIEGVLVVETAAGRWVVPPT 61 + + H+ ++ A A + ++ H H QLLYA+EGV+ V T G W+VPP Sbjct: 13 EVDTFQHLPSS---VVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPH 69 Query: 62 RGVWLQPEVDHQVRMRGDVKMRTVFVNMQELPNLPQDNCVLDIPPLLRELIVAAVGIGPA 121 R +W+ P+V+H++ M V MRT+++N + L + +L++ LLRELI+A + Sbjct: 70 RALWVPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRD 129 Query: 122 LASDSRDWHLLRLLVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQL 181 A SR H+ L++ EL P +P+ +P P DR L+ ICEA++A P ++ A Sbjct: 130 YAPQSRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLADWAGMG 189 Query: 182 GIATRTFHRLFLRETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMF 241 G + RT RLF +ETG++F HW QQ L AL L+RGD + VA GY SQSAF+ MF Sbjct: 190 GASVRTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMF 249 Query: 242 KKHFGIAPSCRCTRADAR 259 +K P+ R + R Sbjct: 250 RKALRTTPNHYLQRQERR 267 >gi|300311011|ref|YP_003775103.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 155 bits (391), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 124/232 (53%) Query: 15 PAAALAIDYPHGHVIEPHRHAYAQLLYAIEGVLVVETAAGRWVVPPTRGVWLQPEVDHQV 74 P A Y HG V H H AQLLY + G++ V TA G WVVPP VW+ +HQ Sbjct: 25 PVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVWIPSGREHQS 84 Query: 75 RMRGDVKMRTVFVNMQELPNLPQDNCVLDIPPLLRELIVAAVGIGPALASDSRDWHLLRL 134 RM V + F+ + P + VL + PLLREL++ A + P SR+ +L+RL Sbjct: 85 RMLQAVTTCSAFIEPEHAPRVASSCQVLAVRPLLRELLIEATRMDPHYVLHSREENLIRL 144 Query: 135 LVHELRSVPVLPLYLPLPADRGLRVICEALMAQPDDDATVDMHAQQLGIATRTFHRLFLR 194 L+ E+ +P ++PLP + L +C +A P + A QL I+ RTF R FL Sbjct: 145 LLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISERTFSRRFLA 204 Query: 195 ETGMRFSHWRQQARLLLALENLARGDKIIDVALDHGYTSQSAFAAMFKKHFG 246 +TGM F WR +A ++ A+ LA G + +A D GY +AF+ MF+K G Sbjct: 205 QTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMTG 256 >gi|300313525|ref|YP_003777617.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 137 bits (346), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 112/221 (50%), Gaps = 3/221 (1%) Query: 32 HRHAYAQLLYAIEGVLVVETAAGRWVVPPTRGVWLQPEVDHQVRMRGDVKMRTVFVNMQE 91 H H QL+ A+ G + ETA G W+VPP VW+ P V H R+ D ++ +F+ Q Sbjct: 37 HSHRKGQLVVALRGAVTCETAQGMWIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPQA 96 Query: 92 LPNLPQDNCVLDIPPLLRELIVAAVGIGPALASDSRDWHLLRLLVHELRSVP--VLPLYL 149 ++P+ C L + PLL ++I A R L +LV EL LPL+L Sbjct: 97 A-SMPEQCCTLALSPLLVQMICHLAEQRQDYAPHERTARLAAVLVEELEHSQRHALPLHL 155 Query: 150 PLPADRGLRVICEALMAQPDDDATVDMHAQQLGIATRTFHRLFLRETGMRFSHWRQQARL 209 P P LR I L P D TV Q+ ++ R+F R ETGM F WR+Q L Sbjct: 156 PAPQHSRLRAIARHLAEHPADRRTVAQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHL 215 Query: 210 LLALENLARGDKIIDVALDHGYTSQSAFAAMFKKHFGIAPS 250 +LAL+ LA G + V+ D GY S SAF MF+K G P+ Sbjct: 216 MLALQRLASGSSVQRVSQDLGYDSVSAFITMFRKTLGKPPA 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 758,038 Number of extensions: 27924 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 5 Length of query: 278 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 194 Effective length of database: 1,222,130 Effective search space: 237093220 Effective search space used: 237093220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)