BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0005.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DM...   152   2e-38

>gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  152 bits (385), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/195 (49%), Positives = 133/195 (68%)

Query: 24  YPFLAIVLWAGNVIVSKMAASAISPAAITFYRLILVLLLMSPFMLRPLWRNRIQIRRHWW 83
           +P  A+++WAGN ++SKM+AS I+P  I+FYR +L  LLMSPF+ R  W  R QIR H  
Sbjct: 8   FPLGAVLIWAGNTVISKMSASVIAPEDISFYRWVLAALLMSPFLARQTWAARAQIRPHLG 67

Query: 84  QLALSGLLAMALFQSLSYRAAESTTATNMAIVTALIPLLTALLSVLVLGEAVTVGMAAGG 143
           ++ +  LL M LFQSL+Y AA + +AT+M I+ +L+PLLT +LS+ +L E  TVG   GG
Sbjct: 68  KIVVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPTVGTLGGG 127

Query: 144 LLSFAGLLYLVGHGDLGAAMHEGVHRGDALMLLAAFSYALYGVLLRRWKMNVPVWQAVYV 203
           +LS  GL  L+G G   A   +GV  GD LMLLA  +Y LYGV+LRRW + +  WQ +Y+
Sbjct: 128 ILSLLGLAVLIGRGHPLALFEQGVVTGDLLMLLATIAYGLYGVMLRRWALPLRTWQLLYM 187

Query: 204 QAVAALVLMLPQFLL 218
           Q + A+VL+ P F+L
Sbjct: 188 QVLMAVVLLFPGFVL 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 435,082
Number of extensions: 12516
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)