BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0001.p
         (395 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311018|ref|YP_003775110.1| CBS domains containing hemolysi...   365   e-102
gi|300310054|ref|YP_003774146.1| Mg2+ and Co2+ transporter prote...    57   2e-09

>gi|300311018|ref|YP_003775110.1| CBS domains containing hemolysin
           protein [Herbaspirillum seropedicae SmR1]
          Length = 442

 Score =  365 bits (938), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/205 (84%), Positives = 191/205 (93%)

Query: 38  DTEEMLRQKIIDHPHSRFLVCENNIDDVLGYIDSKDVLKRLLKGEQFSLQDKGLIHVPLS 97
           D+E  +RQKIIDHPHSRFLVC+ +ID VLGYIDSKDVLKRLLKGEQFSL DKGL+H PLS
Sbjct: 231 DSEATIRQKIIDHPHSRFLVCDGHIDAVLGYIDSKDVLKRLLKGEQFSLADKGLVHPPLS 290

Query: 98  IPDSLNLWEVLERMKAVDEDLAIVVNEYALVVGIISITDVTSVLMGNLLNLSSEEQQIVK 157
           IPDSLNLWEVLERMKA+DEDLAIVVNEYALVVGIIS TDVT VLMGNLL ++ EEQQIV+
Sbjct: 291 IPDSLNLWEVLERMKAMDEDLAIVVNEYALVVGIISTTDVTGVLMGNLLAITEEEQQIVR 350

Query: 158 RDENSWLMDGLTPLAEVMNALDIDEYPNPMGYETLAGFIMYMLRKIPKKTDFALFSEYKF 217
           RDENSWLMDGLTPL +VM+ LDIDEYPNP+GYETL+GFIMYMLRKIPKKTDF LF+E+KF
Sbjct: 351 RDENSWLMDGLTPLNDVMSELDIDEYPNPVGYETLSGFIMYMLRKIPKKTDFVLFAEFKF 410

Query: 218 EVVDIEGNRINQLLVTRYKAEKSDK 242
           EVVDIEGNRINQLLVTR+K +KS+K
Sbjct: 411 EVVDIEGNRINQLLVTRFKQDKSEK 435


>gi|300310054|ref|YP_003774146.1| Mg2+ and Co2+ transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 16/192 (8%)

Query: 52  HSRFLVCENNIDDVLGYIDSKDVLKRLLKGEQFSLQDKGLIHVPLSIPDSLNLWEVLERM 111
           HSRF   +   D V+G + +KD+L R    E F ++D  ++   + IP+S  L  +L   
Sbjct: 99  HSRFPAVDGERDKVVGILLAKDLL-RYYAEESFDVRD--MLRPAIFIPESKRLNVLLRDF 155

Query: 112 KAVDEDLAIVVNEYALVVGIISITDVTSVLMGNLLNLSSEEQQIVKRDENSW-LMDGLTP 170
           +A    +A+VV+EY  V G+I+I DV   ++G++     +E    + ++N   L DG   
Sbjct: 156 RANRNHMAVVVDEYGGVAGLITIEDVLEQIVGDI----EDEYDFDEAEDNVLALKDGPHG 211

Query: 171 LAEVMNAL-DIDEYPNPMGY-------ETLAGFIMYMLRKIPKKTDFALFSEYKFEVVDI 222
               + AL +I+++   +G        +T+ G +   + ++P+K D        FEV+  
Sbjct: 212 ARWRVKALTEIEQFNEEVGSRFSDDDADTIGGLVANHVGRVPRKGDEFDIDGLHFEVLRA 271

Query: 223 EGNRINQLLVTR 234
           +  +++ LLV++
Sbjct: 272 DARQVHVLLVSQ 283


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,227,055
Number of extensions: 51820
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 2
Length of query: 395
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,207,925
Effective search space: 372040900
Effective search space used: 372040900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)