BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0199.0019.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312855|ref|YP_003776947.1| nicotinic acid mononucleotide a...   344   3e-96

>gi|300312855|ref|YP_003776947.1| nicotinic acid mononucleotide
           adenylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  344 bits (883), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 165/220 (75%), Positives = 186/220 (84%)

Query: 13  SPIPAKRCIAILGGSFDPVHNGHVALGDHFVELLQPDELRVIPAGNPWQKHGLQATPAQR 72
           +P  A+RCIA+LGGSFDPVHNGHV L +HFV+LLQPDELR+IPAGNPWQKHGLQA PA R
Sbjct: 2   APPAAQRCIAVLGGSFDPVHNGHVRLAEHFVQLLQPDELRIIPAGNPWQKHGLQARPADR 61

Query: 73  VEMVELAFSHEHVPVVIDQQEIRRATATYTIDTLQALRAELGPEVSIVFLMGADQLQHLD 132
           VEMV  AF  + VPVVID+QEIRRA+ATYTIDTL+ALRAELGP+VSIVFLMGADQLQHLD
Sbjct: 62  VEMVRRAFDRQQVPVVIDEQEIRRASATYTIDTLRALRAELGPQVSIVFLMGADQLQHLD 121

Query: 133 TWQGWQQLFDYAHLCAASRPGFGIDAAQVPDIIMQEFTRRAGTEKEIRTTSHGKAYLASS 192
           TWQ WQ+LFD AHLCAASRPGF +  A VP  + +EF RR    +EIR+T+HG  YLA  
Sbjct: 122 TWQHWQELFDLAHLCAASRPGFELADAHVPPAVREEFKRRNAAPQEIRSTTHGYGYLALG 181

Query: 193 LDVDISSTEIRSLLQRGERPESLIPARVLDYIEQHHLYQN 232
           L VDISSTEIR+ LQRG RP+SLIP RVLDYIEQ HLY+N
Sbjct: 182 LAVDISSTEIRAQLQRGTRPDSLIPGRVLDYIEQQHLYRN 221


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 793,810
Number of extensions: 32419
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)