BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0199.0018.p
         (245 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312856|ref|YP_003776948.1| hypothetical protein Hsero_3561...   288   4e-79

>gi|300312856|ref|YP_003776948.1| hypothetical protein Hsero_3561
           [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  288 bits (736), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 153/173 (88%), Positives = 158/173 (91%), Gaps = 2/173 (1%)

Query: 1   MDIKKLQTAVVDALEDVKAQDIKIYDTTHLTSLFDRVAIASGTSNRQTKALAASVRDKVK 60
           MDIKKLQT VVDALEDVKAQ+I+IYDTTHLTSLFDRVAIASGTSNRQTKALAASVRDKVK
Sbjct: 1   MDIKKLQTLVVDALEDVKAQEIRIYDTTHLTSLFDRVAIASGTSNRQTKALAASVRDKVK 60

Query: 61  AKGGNVVSVEGEDTGEWVLVDLGDMIVHIMQPAIRAYYRLEEIWGDKEVKMGAAKRVASS 120
           AKGGNVVSVEGEDTGEWVLVDLGDMIVHIMQPAIR YYRLEEIWGDKEVK+GAAKR  +S
Sbjct: 61  AKGGNVVSVEGEDTGEWVLVDLGDMIVHIMQPAIRTYYRLEEIWGDKEVKLGAAKRTGTS 120

Query: 121 AAAKKAAEDEKPA-KIRRTREQAVAVEASQALDDDE-TPKKPARKPRTASVAS 171
           AAAK+AA DE PA K RRTR QA AVEASQALDDDE  PKKPARKPRT S  S
Sbjct: 121 AAAKRAAADEAPAPKTRRTRAQAEAVEASQALDDDEDAPKKPARKPRTTSATS 173


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.121    0.320 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 509,100
Number of extensions: 16667
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 5
Length of query: 245
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,226,865
Effective search space: 198752130
Effective search space used: 198752130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 129 (54.3 bits)