BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0199.0014.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312859|ref|YP_003776951.1| cytoplasmic axial filament ribo...   538   e-154
gi|300311210|ref|YP_003775302.1| ribonuclease E protein [Herbasp...   182   3e-47

>gi|300312859|ref|YP_003776951.1| cytoplasmic axial filament
           ribonuclease G protein [Herbaspirillum seropedicae SmR1]
          Length = 487

 Score =  538 bits (1387), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 258/281 (91%), Positives = 269/281 (95%)

Query: 1   MYQDLSLAQRVLRDFVSDDTSNIQVDSRENFQMLQEFGSLYTPSVLPKLMHYRGERPLFD 60
           ++QDLSLAQRVLRDFV D T+ IQVDSRENF MLQEFG++YTPSVL KL HYRGERPLFD
Sbjct: 207 LHQDLSLAQRVLRDFVGDHTATIQVDSRENFHMLQEFGAIYTPSVLTKLTHYRGERPLFD 266

Query: 61  LYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAA 120
           LYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAA
Sbjct: 267 LYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAA 326

Query: 121 HAIARQLRLRNLGGIIILDFIDMENPEHRSAVLSELNKALQRDRTKISVSGFSALGLVEM 180
           HAIARQLRLRNLGGIIILDFIDME+ EHR AVL+EL KALQRDRTKISVSGFS LGLVEM
Sbjct: 327 HAIARQLRLRNLGGIIILDFIDMESTEHRQAVLAELGKALQRDRTKISVSGFSTLGLVEM 386

Query: 181 TRKRTRESLAHILCETCPACKGKGQVKTSRTVCYEILREVLREAKQFNPREFRILAAQVV 240
           TRKRTRESLAHILCETCPACKG+GQVKT RTVCYEILREV+REAKQFNPREFRILA+QVV
Sbjct: 387 TRKRTRESLAHILCETCPACKGRGQVKTPRTVCYEILREVMREAKQFNPREFRILASQVV 446

Query: 241 VDMFLEEESQHLAMLGDFIKKPISLQVQTDYQQEQYDIILM 281
           VDMFLEEESQHLAMLGDFI KPISLQVQ+DYQQEQYDIILM
Sbjct: 447 VDMFLEEESQHLAMLGDFIGKPISLQVQSDYQQEQYDIILM 487


>gi|300311210|ref|YP_003775302.1| ribonuclease E protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1062

 Score =  182 bits (461), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 144/248 (58%)

Query: 1   MYQDLSLAQRVLRDFVSDDTSNIQVDSRENFQMLQEFGSLYTPSVLPKLMHYRGERPLFD 60
           +YQ+ SL  R +RD+   D   I +D+ +     Q+F +   P ++ ++  YR + PLF 
Sbjct: 206 IYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFMAHVMPDMVHRVKRYRDDVPLFS 265

Query: 61  LYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTIDVNTGSFVNGRNFDDTIFKTNLEAA 120
            + +E +IE A  R V L SGG +++D TEA+ ++DVN+     G + + T F TNLEAA
Sbjct: 266 RFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARATRGSDIETTAFNTNLEAA 325

Query: 121 HAIARQLRLRNLGGIIILDFIDMENPEHRSAVLSELNKALQRDRTKISVSGFSALGLVEM 180
             +ARQLRLR+LGG+I++DFIDMEN +++  V   L  AL  DR ++ +   S  GL+E+
Sbjct: 326 DEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKDALHHDRARVQMGKISRFGLMEL 385

Query: 181 TRKRTRESLAHILCETCPACKGKGQVKTSRTVCYEILREVLREAKQFNPREFRILAAQVV 240
           +R+R R SL+     TCP C G G ++ + +   ++LR +  EA + N     + A   V
Sbjct: 386 SRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENSAAIHVQAPVDV 445

Query: 241 VDMFLEEE 248
               L E+
Sbjct: 446 AAFLLNEK 453


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 734,669
Number of extensions: 26989
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)