BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0199.0001.p (180 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t... 156 9e-40 gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t... 153 8e-39 gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t... 143 8e-36 gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri... 142 1e-35 >gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 156 bits (395), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 80/166 (48%), Positives = 109/166 (65%), Gaps = 2/166 (1%) Query: 16 QARGWTTGLKRTGLAALLACAFGGAKIXLKAAQGLRFITAFYWDRNERTREWAKRFYQRR 75 QAR + G K L ALL + L+AAQGL + FYWD +E+TR ++KRF + Sbjct: 246 QARSFAVGGKDQRLVALLVFLSDVHALGLEAAQGLVYTDGFYWDYDEQTRAFSKRFESQF 305 Query: 76 KAM-PTMTQAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGRLREDGQMV 134 K + PTM QAGVYSSV +LKA AA T + V +KMRE+P+ D +N +R DG+++ Sbjct: 306 KNIKPTMVQAGVYSSVYQFLKARAAAKTSDWKVVAQKMREIPIADAVMRNASIRPDGRVI 365 Query: 135 HDMFLVEVKKPSESKVPWDYYKVLSTIPGDKIFKPLAQSDCPLVKK 180 HDM+L +VK P+ESK PWDY K+LS IP + F+P+ + CPLVK+ Sbjct: 366 HDMYLYQVKTPAESKGPWDYLKLLSVIPAQQAFRPM-DAACPLVKQ 410 >gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 153 bits (387), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 73/151 (48%), Positives = 100/151 (66%) Query: 29 LAALLACAFGGAKIXLKAAQGLRFITAFYWDRNERTREWAKRFYQRRKAMPTMTQAGVYS 88 LA LL + L QG+ +YWD N++TR WA R++ + K MP+M QAG S Sbjct: 254 LAGLLIFINDTHSLGLSLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQAGDAS 313 Query: 89 SVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGRLREDGQMVHDMFLVEVKKPSES 148 +V YLKAVKA + +A +VM +R+ ++D F NG +R DG+MVHDM+L+EVKKPSES Sbjct: 314 AVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYLMEVKKPSES 373 Query: 149 KVPWDYYKVLSTIPGDKIFKPLAQSDCPLVK 179 K PWDYYK++ TIPG++ + A+S C L K Sbjct: 374 KRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 >gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 143 bits (360), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 63/139 (45%), Positives = 98/139 (70%), Gaps = 1/139 (0%) Query: 42 IXLKAAQGLRFITAFYWDRNERTREWAKRFYQRRKAMPTMTQAGVYSSVLHYLKAVKAAN 101 + L A+GL ++YWD++E +R++A+RF+Q+ K MP+ QA YS+ YLKAV+A Sbjct: 267 LGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKMKKMPSTHQAAAYSATTTYLKAVQAIG 326 Query: 102 TDNAAEVMKKMRELPVDDMFAQNGRLREDGQMVHDMFLVEVKKPSESKVPWDYYKVLSTI 161 TD++ +VM ++++ +DD F G +R DG+ +HDM+L +VK P+ESK PWDY K+L TI Sbjct: 327 TDDSTKVMAQLKKTRIDD-FYNKGSIRADGRNIHDMYLYQVKSPAESKKPWDYLKLLETI 385 Query: 162 PGDKIFKPLAQSDCPLVKK 180 PG++ F +A S C L+K+ Sbjct: 386 PGEQAFTSVADSKCSLLKQ 404 >gi|300314071|ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 142 bits (358), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 1/155 (0%) Query: 23 GLKRTG-LAALLACAFGGAKIXLKAAQGLRFITAFYWDRNERTREWAKRFYQRRKAMPTM 81 G+ +T LA LL + LK +GL ++YWD NE TR +AKR++ RK MP+ Sbjct: 245 GITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKKMPSS 304 Query: 82 TQAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGRLREDGQMVHDMFLVE 141 QA YS+ L YLK VK TD++ +VM +R+ +DM+ +NG LR DG+++HDM+L + Sbjct: 305 LQAADYSAALQYLKVVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVMHDMYLYQ 364 Query: 142 VKKPSESKVPWDYYKVLSTIPGDKIFKPLAQSDCP 176 VK SESK PWDYYK++ TIP ++ + A+S C Sbjct: 365 VKAQSESKYPWDYYKLVQTIPAEQAWTTKAESKCA 399 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.132 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 453,308 Number of extensions: 14291 Number of successful extensions: 37 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 4 Length of query: 180 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 101 Effective length of database: 1,245,805 Effective search space: 125826305 Effective search space used: 125826305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)