BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0197.0006.p
         (523 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyas...   636   0.0  
gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyas...    66   8e-12

>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  636 bits (1641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/424 (72%), Positives = 346/424 (81%), Gaps = 1/424 (0%)

Query: 1   MPTFDSSLVWFRRDLRISDHAALYYALKQSKQVYCVFVYDRDILDALIADGLQADRRIDF 60
           MP FD SLVWFRRDLR++DHAALYYAL QS+QV+CVFV+D DIL AL A+G+  DRRIDF
Sbjct: 1   MPQFDRSLVWFRRDLRMTDHAALYYALSQSRQVWCVFVFDTDILAALKAEGVTQDRRIDF 60

Query: 61  IMACIAELDAALRAAGGALIVRHASAQQDIPALAAELGVDAVFTNHDYEPQAIKRDATVK 120
           ++A +AELD ALR AGG LIV H SA   IPALAAEL V AV+ N DYEP A++RDA V 
Sbjct: 61  LLASVAELDEALRHAGGGLIVLHGSAVTQIPALAAELDVQAVYANTDYEPAAVERDAAVA 120

Query: 121 NRLEKDGRQLLTYKDQVIFEKDEVLSLAGRPFSVFTPYKNAWMNKLSGPGGDFYLKPYPV 180
             L K G QLL+YKDQVIFEKDEVL+ + +PFSVFTPYKNAWM+KL+   GDF+LKPYPV
Sbjct: 121 QTLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPV 180

Query: 181 DAYFAQLAPPSKKYHKALPTLEDLGFLPSNLKDLRIPTGMSGAAQLLEDFLPRLGKYGDT 240
           + Y   LA P  K   ALP+   LGF PSNL++L+IPTGMSGA  LL++FL R+G YG  
Sbjct: 181 EKYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLDEFLDRIGSYGAA 240

Query: 241 RDFPAIKGPSYLSVHLRFGTISIRTLARAGA-AMRIGEGRRGAPVWLSELVWRDFYFMIL 299
           RDFPA+KGPSYLSVHLRFGTISIRTLARA   AM  G+G  GA VWLSEL WRDFYFMIL
Sbjct: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSELTWRDFYFMIL 300

Query: 300 FHHPRVAERSFKSDYDAIQWEGGKHARDMFARWCEGRTGYPLVDAAMLQLNQTGYMHNRL 359
            HHPRV   +FK +YDAIQWE G  A  +FA WCEGRTGYPLVDAAM Q+NQ+GYMHNRL
Sbjct: 301 HHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRL 360

Query: 360 RMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPIT 419
           RMV ASFLTKDLGIDWRWGE+YFA  LNDFDL+ANNGGWQWASSSGCDAQPYFRIFNP+T
Sbjct: 361 RMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVT 420

Query: 420 QSEK 423
           QSEK
Sbjct: 421 QSEK 424


>gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 15/186 (8%)

Query: 233 RLGKYGDTRDFP--AIKGPSYLSVHLRFGTISIRTLARAGAAMRIGEGRRGAPVWLSELV 290
           R G Y  TR+    A+ G   LS +L  G +S+R +  AG   R     +   V+  EL 
Sbjct: 57  RPGAYARTRNSLDGAVTG---LSPYLTHGMVSLRDVL-AGVCQRYPLEVQHKFVY--ELG 110

Query: 291 WRDFYFMILFHHPRVAERSFKSDYDAIQWEGGKHARDMFARWCEGRTGYPLVDAAMLQLN 350
           WR FY  +     R   R F S +     E   +AR++      G TG P++D A+  L 
Sbjct: 111 WRAFYRYVWS---RRGARIFDSLHAGPLPEAA-YARELPDDIRAGATGVPVIDQAVRTLY 166

Query: 351 QTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADLLNDFDLSANNGGWQWASSSGCDAQP 410
            TG +HN  RM  AS++     + WR G  +    L D DL++N+  WQW + +G   +P
Sbjct: 167 ATGNLHNHARMWLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSH-KP 225

Query: 411 YFRIFN 416
           Y  +FN
Sbjct: 226 Y--LFN 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,498,878
Number of extensions: 61224
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 523
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 433
Effective length of database: 1,193,720
Effective search space: 516880760
Effective search space used: 516880760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)