BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0197.0005.p
         (68 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa...    71   2e-14
gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t...    53   5e-09
gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t...    53   5e-09

>gi|300312240|ref|YP_003776332.1| amino acid ABC transporter
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score = 71.2 bits (173), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 40/46 (86%)

Query: 11 ILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANGXWVAVFVCA 56
          ILQV+DLAV+YGHIEAVKGISL+LNEGEITALVGANG   +  + A
Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLA 55


>gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 52.8 bits (125), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 11 ILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANG 47
          IL+VQ L+V+YG I+AVKGI L +NEGE+  L+GANG
Sbjct: 5  ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANG 41


>gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 52.8 bits (125), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 11 ILQVQDLAVSYGHIEAVKGISLTLNEGEITALVGANG 47
          IL+VQ L+V+YG I+AVKGI L +NEGE+  L+GANG
Sbjct: 5  ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANG 41


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 214,529
Number of extensions: 6494
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 1,619,870
Length adjustment: 40
Effective length of query: 28
Effective length of database: 1,430,470
Effective search space: 40053160
Effective search space used: 40053160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)