BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0004.p (173 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 176 6e-46 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 174 3e-45 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 102 2e-23 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 100 1e-22 gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 99 1e-22 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 176 bits (447), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 101/197 (51%), Positives = 120/197 (60%), Gaps = 32/197 (16%) Query: 3 FNGEDLTQQSPHRIVGSGVVQVAEGRATLTTLTIEEN-----------------LSLGAY 45 FN +D+ +PH+I G+ + + +T+ EN L+LG + Sbjct: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGF 120 Query: 46 TRKDKAAVAGDLE---WVYSLFPVLKQRAKGLAGNLSGGEP-------VAGMNPAEKTXD 95 +K A LE WV L +A LA +LS GE P D Sbjct: 121 RNAEKEARERALELLSWVR-----LDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLD 175 Query: 96 EPVAGMNPAEKTELMAEIINIKQRGFSIFMIEHDMRFVMGLCDRIAVLNFGKIIAEGTPD 155 EPVAGMNPAEKTELM+EI+NIKQRGF+IFMIEHDMRFVMGLC+RIAVLNFGKIIAEGTPD Sbjct: 176 EPVAGMNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPD 235 Query: 156 EIKNNQEVIEAYLGKEE 172 +IKNNQEVIEAYLGKEE Sbjct: 236 QIKNNQEVIEAYLGKEE 252 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 174 bits (441), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/176 (52%), Positives = 114/176 (64%), Gaps = 7/176 (3%) Query: 1 VIFNGEDLTQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRKDKAAVAGDLEWV 60 V+ +G+DL Q SPHRIV SGVVQVAEGRATLTTLT+EENL LGAYTRKDK VA DLEWV Sbjct: 67 VLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWV 126 Query: 61 YSLFPVLKQRAKGLAGNLSGGEP-------VAGMNPAEKTXDEPVAGMNPAEKTELMAEI 113 YSLFPVLK RA GLAGNLSGGE P DEP G+ P E+ + Sbjct: 127 YSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIV 186 Query: 114 INIKQRGFSIFMIEHDMRFVMGLCDRIAVLNFGKIIAEGTPDEIKNNQEVIEAYLG 169 I + G ++ ++E ++R + + R VL GKI+ E + + N +V+EAYLG Sbjct: 187 QEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 8/176 (4%) Query: 1 VIFNGEDLTQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRKDKAAVAGDLEWV 60 VIF G+D+TQ H I+ G+ EGR +LT+ ENL +GA+ ++A G +E+V Sbjct: 59 VIFEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQG-IEYV 117 Query: 61 YSLFPVLKQRAKGLAGNLSGGEP------VAGMN-PAEKTXDEPVAGMNPAEKTELMAEI 113 + LFP LK+RA AG +SGGE A M+ P DEP G+ P ++ I Sbjct: 118 FGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDII 177 Query: 114 INIKQRGFSIFMIEHDMRFVMGLCDRIAVLNFGKIIAEGTPDEIKNNQEVIEAYLG 169 I++ G ++F++E + +G+ DR VL G ++ T + N +V +AYLG Sbjct: 178 RTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 99.8 bits (247), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 11/180 (6%) Query: 1 VIFNGEDLTQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTR----KDKAAVAGD 56 V G+++T H+I G+ EGR T+++ +NL LGA+ R + K +A D Sbjct: 58 VTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHD 117 Query: 57 LEWVYSLFPVLKQRAKGLAGNLSGGEP-------VAGMNPAEKTXDEPVAGMNPAEKTEL 109 LE LFP LK+R LAG LSGGE +NP DEP G+ P E+ Sbjct: 118 LERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEV 177 Query: 110 MAEIINIKQRGFSIFMIEHDMRFVMGLCDRIAVLNFGKIIAEGTPDEIKNNQEVIEAYLG 169 I+ +K++G ++ ++E + + D VL GKI G D+++N+ V AYLG Sbjct: 178 FRIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 99.4 bits (246), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 20/193 (10%) Query: 1 VIFNGEDLTQQSPHRIVGSGVVQVAEGRATLTTLTIEENLSLGAYTRKDKAAVAGDL--- 57 V F G+++T + I G G+ + + + +T+ EN+++GAY R + +A L Sbjct: 412 VQFRGQEVTGRGSRHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASMLRLD 471 Query: 58 ---------EWVYSLFPV-LKQRAKGLAGNLSGGEP-------VAGMNPAEKTXDEPVAG 100 E + V LK + LAG LS G+ +P DEP AG Sbjct: 472 RKEEARILAEAARQIERVGLKAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAG 531 Query: 101 MNPAEKTELMAEIINIKQRGFSIFMIEHDMRFVMGLCDRIAVLNFGKIIAEGTPDEIKNN 160 + EK L + ++ G +I ++EHDM FVM L DRI V++FG+ IAEG P +I+NN Sbjct: 532 LRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPADIQNN 591 Query: 161 QEVIEAYLGKEEE 173 V+EAYLG +E Sbjct: 592 PAVLEAYLGVADE 604 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 551,431 Number of extensions: 22838 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 40 Length of query: 173 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 94 Effective length of database: 1,245,805 Effective search space: 117105670 Effective search space used: 117105670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)