BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0197.0001.p
         (58 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa...   110   2e-26
gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t...    70   3e-14
gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC t...    63   4e-12
gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa...    61   2e-11
gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t...    58   2e-10

>gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  110 bits (275), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/58 (94%), Positives = 57/58 (98%)

Query: 1   VKEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLGG 58
           V+EINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLED+GANLL NPKVVEAYLGG
Sbjct: 186 VQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243


>gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score = 70.1 bits (170), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 1   VKEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLG 57
           ++ I ++G+TV LVEQN  +AL +A RGYVLE G +V+ DTGANLL N  V +AYLG
Sbjct: 177 IRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233


>gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 63.2 bits (152), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 40/57 (70%)

Query: 1   VKEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLG 57
           V E+   G++VLLVEQN R AL+ A  GYVLE GK+ L+   A L  +P+V++AYLG
Sbjct: 182 VSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLG 238


>gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 60.8 bits (146), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 1   VKEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLG 57
           + E+ + G+++LLVEQN R AL++A  GYVLE G I +    + L H+ +V+EAYLG
Sbjct: 182 IAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLG 238


>gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%)

Query: 1   VKEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDTGANLLHNPKVVEAYLG 57
           ++ ++  G+T+LLVEQN + AL  A RGYV+E+G I ++     +L +P+V  AYLG
Sbjct: 183 IRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 153,226
Number of extensions: 4332
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 7
Length of query: 58
Length of database: 1,619,870
Length adjustment: 31
Effective length of query: 27
Effective length of database: 1,473,085
Effective search space: 39773295
Effective search space used: 39773295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)