BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0196.0006.p
         (429 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313158|ref|YP_003777250.1| anaerobic dehydrogenase family ...   605   e-174

>gi|300313158|ref|YP_003777250.1| anaerobic dehydrogenase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score =  605 bits (1559), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/393 (76%), Positives = 322/393 (81%), Gaps = 16/393 (4%)

Query: 49  RVGKKGEGKLXTLPALVGAWRHAGGGLQLSTSDSFPKNGAFLQRPDLLLQHNNGVPTRTI 108
           R G      +  LPALVGAWRH  GG+Q+S SDSFPK+ A L RPDL   H  G P R I
Sbjct: 305 RGGGMAARNVACLPALVGAWRHPAGGVQMSVSDSFPKDAAALSRPDLAAGH--GKPARVI 362

Query: 109 NMSTIGDDLLREASADFGPRVEAMIVYNSNPVAVAPESGKVAQGFAREDLFTVVLEHFQT 168
           NMSTIGD LL  ASADFGP+VEA+IVYNSNPVAVAPES KVAQGFAREDLFTVVLEHFQT
Sbjct: 363 NMSTIGDALLHPASADFGPKVEALIVYNSNPVAVAPESAKVAQGFAREDLFTVVLEHFQT 422

Query: 169 DTADYADILLPATTQLEHIDVHATYGHVYMMANNAAIAPLGEAKPNSEIFRLLAARIGFT 228
           DTADYADILLPATTQLEHIDVHA+YGHVY+MANNAAIAP+GEAKPN+EIFR LAA +GFT
Sbjct: 423 DTADYADILLPATTQLEHIDVHASYGHVYIMANNAAIAPMGEAKPNTEIFRRLAAAMGFT 482

Query: 229 EDCFSDSDDAIAAQAFDRSHPRAADYDWERLKQTGWQRLNMPAAPFAEGGFGTPSGKCEF 288
           EDCF DSDD +AA AF R  PR+A YDWE+LKQ GWQRL +P APFAEGGF TPSGKCEF
Sbjct: 483 EDCFQDSDDQLAAVAFKRDDPRSAGYDWEQLKQKGWQRLAVPVAPFAEGGFATPSGKCEF 542

Query: 289 YSARMLADGLDPLPTYIAPYESAASNAALAQKYPLAMISPPARNFLNSSFVNVQSLRDTE 348
           YS +M A GLDPLP YI PYES ASN  LA +YPLAMISPPARNFLNSSFVNVQSLRDTE
Sbjct: 543 YSEQMKAAGLDPLPAYIPPYESVASNPQLAARYPLAMISPPARNFLNSSFVNVQSLRDTE 602

Query: 349 GEPHLDIHPDDAAA--------------XGSMLAKARVTPKARVGLVVGLSIWWKKFSGD 394
           GEPHLD+HP DAAA               GS+ A+ RVT KARVGLVVGLSIWWKKF+ D
Sbjct: 603 GEPHLDMHPQDAAARGISQGDMVRIFNDRGSLQARVRVTDKARVGLVVGLSIWWKKFAAD 662

Query: 395 GKNANEVTSQRLTDMGNAPTFYDVLVQVEACPS 427
           GKNANEVTSQRLTDMG+APTFYDVLVQVE  P+
Sbjct: 663 GKNANEVTSQRLTDMGHAPTFYDVLVQVEKLPA 695



 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 54/61 (88%)

Query: 1  LLVTVKDGVATEVKGDPDHPTTAGVLCTKVSRYTDRTYHKDRLLHPMRRVGKKGEGKLXT 60
          LLVTVKDGVATEV+GDP HP TAGVLCTKVSRY +RTYH DRLLHPMRRVGKKGEGK   
Sbjct: 20 LLVTVKDGVATEVRGDPAHPPTAGVLCTKVSRYAERTYHPDRLLHPMRRVGKKGEGKFER 79

Query: 61 L 61
          +
Sbjct: 80 I 80


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,436,096
Number of extensions: 63221
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 429
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,203,190
Effective search space: 410287790
Effective search space used: 410287790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)