BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0196.0004.p
         (199 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313157|ref|YP_003777249.1| long-chain-fatty-acid-CoA ligas...   279   1e-76
gi|300311697|ref|YP_003775789.1| acyltransferase family protein ...    59   3e-10

>gi|300313157|ref|YP_003777249.1| long-chain-fatty-acid-CoA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 566

 Score =  279 bits (714), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 139/147 (94%)

Query: 12  PVEVGHDDIAFLQYTGGTTGVAKGAVLTHRNLVANVLQAEEWLMPALKQGAKLDQLVFIC 71
           PV + HDDIAFLQYTGGTTGVAKGAVLTHRNLVANVLQAEEWL PALK G  +DQLVF+C
Sbjct: 199 PVTLTHDDIAFLQYTGGTTGVAKGAVLTHRNLVANVLQAEEWLTPALKAGKPIDQLVFVC 258

Query: 72  ALPLYHIFALTVCNMLGTREGALNVLIPNPRDIPGFIKELGKYKVNTFPAVNTLYNALLN 131
           ALPLYHIFALTVCNMLGTREGALN+LIPNPRDIPGF+KEL KYKVNTFPAVNTLYNALLN
Sbjct: 259 ALPLYHIFALTVCNMLGTREGALNLLIPNPRDIPGFVKELAKYKVNTFPAVNTLYNALLN 318

Query: 132 HPDFAKLDFSGYRCCVGGGMAVQKSVA 158
           + DFA+LDFSGYRCCVGGGMAVQKSVA
Sbjct: 319 NADFARLDFSGYRCCVGGGMAVQKSVA 345


>gi|300311697|ref|YP_003775789.1| acyltransferase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 932

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 10  FFPVEVGHDDIAFLQYTGGTTGVAKGAVLTHRNLVANVLQAEEWLMPALKQGAKLD-QLV 68
           F       DDIAF+QYT G+TG  KG  LTH NL++NV         AL + +++    +
Sbjct: 261 FLRYRPSRDDIAFIQYTSGSTGDPKGVTLTHANLLSNVR--------ALGKVSRVSPSDI 312

Query: 69  FICALPLYHIFALTVCNMLGTREGALNVLIPNPRDIPG----FIKELGKYKVNTFPAVNT 124
           F+  LPLYH   L +    G+    + +++ +P         ++ +L +++     A N 
Sbjct: 313 FVSWLPLYHDMGL-IGAWFGSLYHGIPLVLMSPMTFLAQPSIWLDQLSRHRGTISAAPNF 371

Query: 125 LYNALLNHPD---FAKLDFSGYRCCVGGGMAVQKSV 157
            Y   L H +    + LD S +R  + G   V  + 
Sbjct: 372 AYELCLRHVNDALLSSLDLSCWRLALNGSEPVSATT 407


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 620,453
Number of extensions: 23618
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,236,335
Effective search space: 145887530
Effective search space used: 145887530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)