BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0010.p
         (96 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei...   101   1e-23
gi|300310189|ref|YP_003774281.1| transmembrane protein [Herbaspi...    77   2e-16
gi|300312093|ref|YP_003776185.1| hypothetical protein Hsero_2782...    69   8e-14
gi|300311453|ref|YP_003775545.1| signal transduction containing ...    68   1e-13
gi|300311427|ref|YP_003775519.1| signal transduction histidine k...    67   4e-13

>gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 695

 Score =  101 bits (252), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 52/58 (89%)

Query: 5   AAREQGHFALMFCDLDGFKAINDSLGHHVGDLMLVEVAQRVHSIMRSQDTVARLGGDE 62
           AAREQGHFALMF DLDGFKAINDSLGHHVGD +LVEVAQR+ S  R+ DTVARLGGDE
Sbjct: 291 AAREQGHFALMFMDLDGFKAINDSLGHHVGDRLLVEVAQRLTSSSRANDTVARLGGDE 348


>gi|300310189|ref|YP_003774281.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 706

 Score = 77.4 bits (189), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 45/58 (77%), Gaps = 1/58 (1%)

Query: 6   AREQGH-FALMFCDLDGFKAINDSLGHHVGDLMLVEVAQRVHSIMRSQDTVARLGGDE 62
           AR  G  FA++F DLDGFKAINDSLGH VGD +LV VAQR+   +R +D VAR+GGDE
Sbjct: 287 ARRNGKTFAVLFMDLDGFKAINDSLGHAVGDGLLVAVAQRIRQCLRGEDMVARIGGDE 344


>gi|300312093|ref|YP_003776185.1| hypothetical protein Hsero_2782
           [Herbaspirillum seropedicae SmR1]
          Length = 601

 Score = 68.6 bits (166), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 5   AAREQGHFALMFCDLDGFKAINDSLGHHVGDLMLVEVAQRVHSIMRSQDTVARLGGDE 62
           A RE+    L+F DLDGFK IND+LGH  GD +L E+ +R+  + R  DT+AR+GGDE
Sbjct: 435 ACRERNGVGLLFLDLDGFKPINDTLGHKAGDQVLQEITRRLRQVARHGDTLARVGGDE 492


>gi|300311453|ref|YP_003775545.1| signal transduction containing
           PAS/GGDEF/EAL domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 683

 Score = 68.2 bits (165), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 5   AAREQGHFALMFCDLDGFKAINDSLGHHVGDLMLVEVAQRVHSIMRSQDTVARLGGDEGH 64
           A  E  H  +MF DL+ FK IND+LGH  GD++LVEVA R+   +R QD VARLG DE  
Sbjct: 269 ARHENLHGCVMFIDLNRFKPINDTLGHVAGDMLLVEVAMRLRRALREQDVVARLGADE-- 326

Query: 65  RLFKPALF 72
             F  ALF
Sbjct: 327 --FAVALF 332


>gi|300311427|ref|YP_003775519.1| signal transduction histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 560

 Score = 66.6 bits (161), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 37/52 (71%)

Query: 11  HFALMFCDLDGFKAINDSLGHHVGDLMLVEVAQRVHSIMRSQDTVARLGGDE 62
           HF L+F DLD FKA+ND  GH  GD +LV +AQR+   +R  D+VAR GGDE
Sbjct: 431 HFGLLFIDLDRFKAVNDEYGHDEGDKVLVTIAQRLQHTLRHDDSVARFGGDE 482


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 282,652
Number of extensions: 9565
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 18
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 18
Length of query: 96
Length of database: 1,619,870
Length adjustment: 65
Effective length of query: 31
Effective length of database: 1,312,095
Effective search space: 40674945
Effective search space used: 40674945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 123 (52.0 bits)