BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0007.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei...   246   1e-66
gi|300310189|ref|YP_003774281.1| transmembrane protein [Herbaspi...    55   3e-09

>gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 695

 Score =  246 bits (628), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/218 (70%), Positives = 171/218 (78%), Gaps = 12/218 (5%)

Query: 1   MLSASYDSLLVVVSLLVAVLASYTALDMTERINATQEYAGRS---WLFGGAVAMGIGIWS 57
           ML A+YD LLVVVSLLVA+LASYTALDM ERIN T    GR+   WL GGAVAMG+GIWS
Sbjct: 1   MLIATYDKLLVVVSLLVAILASYTALDMAERINTTASQHGRAARWWLAGGAVAMGLGIWS 60

Query: 58  MHFVGMLAFRLPIDLGYDPWITFLSLLIAIGVSGFALWIVSRPELPLRRLLNSALVMGVG 117
           MHF+GMLAFRLPI LGYD  IT LSL+IAI VSGFALWIV+RPELP RRLL SAL MG+G
Sbjct: 61  MHFIGMLAFRLPIALGYDAGITALSLVIAIAVSGFALWIVTRPELPTRRLLGSALFMGIG 120

Query: 118 IASMHYAGMAAMLMTPGIHYDPLLFVASIAIAVGASGAALWIAFRLRRNTPYVKLARAGA 177
           IA MHY GMAA+ M PGI YD  LF+AS+AIA+ AS AALWIAF LRRNTP+V+ AR GA
Sbjct: 121 IACMHYTGMAALRMQPGIAYDLFLFLASVAIAIAASAAALWIAFSLRRNTPHVRAARGGA 180

Query: 178 AVVMGVAIVGMHYTGMAAANFP---------EGXRAGW 206
           +VVMG+AI GMHYTGM AA+F          EG   GW
Sbjct: 181 SVVMGIAIFGMHYTGMGAASFSRDSICLSAREGVAPGW 218


>gi|300310189|ref|YP_003774281.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 706

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 6/142 (4%)

Query: 2   LSASYDSLLVVVSLLVAVLASYTALDMTERINATQEYAGRSWLFGGAVAMGIGIWSMHFV 61
           +S S+  LL+  ++LVA L++Y AL+++ER+   +    R WL  GAV +G+G+W+  F+
Sbjct: 1   MSGSFHFLLLAFAVLVASLSAYAALEVSERMVMQESQHRRLWLSVGAVVLGLGVWATLFL 60

Query: 62  GMLAFRLPIDLGYDPWITFLSLLIAIGVSGFALWIVS---RPELPLRRLLNSALVMGVGI 118
            + A  L + +G+D  +T L+LL+ +G S F L  +S   RP     RL    L +G  I
Sbjct: 61  TVAALGLSMPVGFDIRLTVLALLLCLG-SAFYLMHLSGLRRPHPS--RLAIGGLSIGAAI 117

Query: 119 ASMHYAGMAAMLMTPGIHYDPL 140
            +  +  +AAM + P + Y  +
Sbjct: 118 NAAFHMALAAMQLLPALLYQQV 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 537,296
Number of extensions: 20676
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)