BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0006.p
         (340 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312607|ref|YP_003776699.1| phospholipase A1 protein [Herba...   341   5e-95

>gi|300312607|ref|YP_003776699.1| phospholipase A1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  341 bits (874), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 179/314 (57%), Positives = 228/314 (72%), Gaps = 14/314 (4%)

Query: 30  MLLPSQPHTQRPFAPKRLILALTAIGALSLMQG--ASAGISLLQPPKLVDGNKPFTLTLL 87
           M  P     + P   + + LAL A+G  SL+ G  A AGI+L+QPPK +D +KP  LTLL
Sbjct: 1   MFSPRHCLPRLPLPLRSVALALCALGG-SLLIGMPAHAGITLVQPPKRIDVSKPLELTLL 59

Query: 88  VTEDDHDSQTYAIPDNLAVAASADMTPPVQLRMEREAGAPAELTLKRGEFRKISYSATLP 147
           V+E+D   +TY +P  L VAASADM PP Q+ ++R   +   +TL++G+FRK+ Y   LP
Sbjct: 60  VSEEDQPERTYTLPSTLLVAASADMIPPQQISLQR-VDSEGSITLRQGQFRKLRYRGMLP 118

Query: 148 DYLRGVVRIETVGVDASPVLVAVIRPKD--GKMP-------VPSAEGIALAGAATPSASV 198
           + LRG+VRIE +G+DA+PVLVAV+RP    G +P        P A+  +      PSA+V
Sbjct: 119 ERLRGMVRIEPIGMDAAPVLVAVVRPDAALGALPESPDLINTPLADSSSTVAPVAPSATV 178

Query: 199 ITPGTDASPIGIAPAALDLI-NIPRLSFHEPMYFAVGNSGGNRNAKFQLSFKFRIFQPED 257
            TPG DASP+  APAA D++ N  RLSF+EPMYF+VGNSGG+ NA+FQLS KFR+F P+D
Sbjct: 179 FTPGADASPLDSAPAAEDILSNNRRLSFNEPMYFSVGNSGGDTNARFQLSLKFRLFVPDD 238

Query: 258 MRSRGLIDNLYFGYTQYSLWDLQSPSAPFRDTSYRPSLFYYLPDLGIHNSILSRMAVSTG 317
            RSRG +DNLY GYTQ+SLWDL +PSAPFRDTSYRPSLFYYLPD+GI N +LSR+ ++TG
Sbjct: 239 PRSRGPLDNLYLGYTQFSLWDLSAPSAPFRDTSYRPSLFYYLPDVGIQNRVLSRIGIATG 298

Query: 318 LEHESNGRDGAQSR 331
           LEHESNGRDGAQSR
Sbjct: 299 LEHESNGRDGAQSR 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,154,935
Number of extensions: 52102
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,212,660
Effective search space: 308015640
Effective search space used: 308015640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)