BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0002.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease [...   367   e-103
gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme...    62   4e-11

>gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  367 bits (942), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/265 (75%), Positives = 227/265 (85%)

Query: 1   LPVLLGAREGLAWLVCAAPVVLGFVLPVLILLQLMWRESELSMATNFARYAGWTWNSFRF 60
           LPVL  A+  LAWLVC  PVVLGFVLPV ILL+L W E+   M  +  RYAGW WNSFRF
Sbjct: 271 LPVLSRAQTALAWLVCGLPVVLGFVLPVAILLRLWWSEAGQGMGFDVGRYAGWVWNSFRF 330

Query: 61  GGLAAAMAVVLALALGFAQRTAGLPRFRSALLRFVARLASMGYALPGSVIAVGILLPMAW 120
           GG+AA  A+VLALAL FA R+ GLPR ++ALLR  ARLA MGYA+PGSVIAVGILLP+AW
Sbjct: 331 GGMAALAAIVLALALCFALRSGGLPRLQAALLRLTARLAGMGYAIPGSVIAVGILLPVAW 390

Query: 121 LQAAFPGSSAGVWLTATALGVIYAYLVRFTAVAVQSVEAGYTRIPLSMDEAARTMGASRS 180
           LQ+ +PG+  GV LTA++LGVIYAYLVRFTAVAVQSVE+GYTRIP S+DEAAR++G+SR+
Sbjct: 391 LQSLWPGAGLGVLLTASSLGVIYAYLVRFTAVAVQSVESGYTRIPASLDEAARSLGSSRA 450

Query: 181 RIVYKVHMPLLWRSLATGALMVFVDVVKELPATLLLRPFNTDTLAVIAHNLARDERLGEA 240
            I ++VHMPLLWRSLA  ALMVFVDVVKELPATLLLRPF+TDTLAVIAHNLARDERLGEA
Sbjct: 451 VIAWRVHMPLLWRSLAVAALMVFVDVVKELPATLLLRPFDTDTLAVIAHNLARDERLGEA 510

Query: 241 ALPALSIVLVGLIPVMLVTRALNKQ 265
           ALPALSIVLVGL PV+LV RAL+ +
Sbjct: 511 ALPALSIVLVGLAPVLLVMRALDGK 535


>gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 21/196 (10%)

Query: 57  SFRFGGLAAAMAVVLALALGFAQRTAGLPRFRSALLRFVARLASMGYALPGSVIAVGILL 116
           S +  GLA  + +VL +A  +     GL R+RSAL  F+  + ++   LP +V+   +L+
Sbjct: 11  SLKVAGLATLLNLVLGVAAAY-----GLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLLV 65

Query: 117 PM-------AWLQAAFPGSSAGVWLTATALGVIYAYLVRFTAVAVQSVEAGYTRIPLSMD 169
                    AWL+        G+ L  T  G + A  V    + ++S  A +  +   M+
Sbjct: 66  LFGRRGALGAWLE------RMGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQME 119

Query: 170 EAARTMGASRSRIVYKVHMPLLWRSLATGALMVFVDVVKELPATLLLR---PFNTDTLAV 226
           +AAR +G S + + ++V +PL  R +  G L+ F   + E  ATL++    P  T TL+V
Sbjct: 120 DAARVLGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSV 179

Query: 227 IAHNLARDERLGEAAL 242
             +   +    G A L
Sbjct: 180 AIYEAVQAGDDGSATL 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 800,188
Number of extensions: 30413
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)