BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0194.0012.p (215 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 140 7e-35 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 139 2e-34 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 138 3e-34 gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p... 135 2e-33 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 135 3e-33 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 140 bits (354), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 76/114 (66%), Positives = 91/114 (79%), Gaps = 3/114 (2%) Query: 68 TDVLVLHHINHRTQGARAGEQGRGFAVVAAEVRGLAQRSASAAKEIAGLIQNSVKKVDAG 127 T++L L N + ARAGEQGRGFAVVA+EVR LAQRSASAAKEI LI +SV KV+ G Sbjct: 378 TNILAL---NAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENG 434 Query: 128 STLVDQAGNTMQDIVRSVKHVADIMTEISAASDEQSAGIRQVNDAIEQIDDMTQ 181 S LV+QAG+TM DIV S++ V D+MTEI+ A+ EQS+GI QVN+AI QIDDMTQ Sbjct: 435 SKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQ 488 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 71/114 (62%), Positives = 93/114 (81%), Gaps = 3/114 (2%) Query: 68 TDVLVLHHINHRTQGARAGEQGRGFAVVAAEVRGLAQRSASAAKEIAGLIQNSVKKVDAG 127 T++L L N + ARAGEQGRGFAVVA EVR LAQRSAS+AKEI GLI++SV+ V+AG Sbjct: 375 TNILAL---NAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLIESSVQHVEAG 431 Query: 128 STLVDQAGNTMQDIVRSVKHVADIMTEISAASDEQSAGIRQVNDAIEQIDDMTQ 181 LVD+AG TM ++VRS++ V D+M+EI+AAS+EQS+GI Q+N AI Q+D++TQ Sbjct: 432 QKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMDEVTQ 485 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 138 bits (348), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/137 (60%), Positives = 100/137 (72%), Gaps = 8/137 (5%) Query: 47 NAFNRWMVRCISAAGMKDMTA--TDVLVLHHINHRTQGARAGEQGRGFAVVAAEVRGLAQ 104 NA +R +V IS + D A T++L L N + ARAGEQGRGFAVVA+EVR LAQ Sbjct: 352 NASSRKIVDIIS---VIDGIAFQTNILAL---NAAVEAARAGEQGRGFAVVASEVRTLAQ 405 Query: 105 RSASAAKEIAGLIQNSVKKVDAGSTLVDQAGNTMQDIVRSVKHVADIMTEISAASDEQSA 164 RSASAAKEI LI +SV KVD GS LV+QAGNTMQ++V SV+ V DI+ EISAAS EQ+ Sbjct: 406 RSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTH 465 Query: 165 GIRQVNDAIEQIDDMTQ 181 GI Q+N AI Q+D +TQ Sbjct: 466 GIEQINLAITQMDQVTQ 482 >gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 668 Score = 135 bits (341), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/114 (65%), Positives = 88/114 (77%), Gaps = 3/114 (2%) Query: 68 TDVLVLHHINHRTQGARAGEQGRGFAVVAAEVRGLAQRSASAAKEIAGLIQNSVKKVDAG 127 T++L L N + ARAGEQGRGFAVVA+EVR LAQRSASAAKEI LI +SV KVDAG Sbjct: 500 TNILAL---NAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSVDKVDAG 556 Query: 128 STLVDQAGNTMQDIVRSVKHVADIMTEISAASDEQSAGIRQVNDAIEQIDDMTQ 181 LVD+AG TM +IV SV+ VA IM+EI+ AS EQS GI QVNDAI Q++ +TQ Sbjct: 557 GRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVNDAITQMEAITQ 610 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 135 bits (339), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 72/114 (63%), Positives = 88/114 (77%), Gaps = 3/114 (2%) Query: 68 TDVLVLHHINHRTQGARAGEQGRGFAVVAAEVRGLAQRSASAAKEIAGLIQNSVKKVDAG 127 T++L L N + ARAGEQGRGFAVVA+EVR LAQRSASAAKEI LI +SV +VD G Sbjct: 371 TNILAL---NAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVSRVDNG 427 Query: 128 STLVDQAGNTMQDIVRSVKHVADIMTEISAASDEQSAGIRQVNDAIEQIDDMTQ 181 S LV+QAG TM ++V SV+ V D++ EISAAS+EQS GI Q+N AI Q+D +TQ Sbjct: 428 SRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQ 481 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.126 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 519,253 Number of extensions: 19195 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 236 Number of HSP's successfully gapped: 68 Length of query: 215 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 134 Effective length of database: 1,236,335 Effective search space: 165668890 Effective search space used: 165668890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)