BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0006.p
         (126 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314078|ref|YP_003778170.1| uncharacterized protein involve...   131   1e-32
gi|300311615|ref|YP_003775707.1| outer membrane biogenesis prote...   117   2e-28

>gi|300314078|ref|YP_003778170.1| uncharacterized protein involved
           in outer membrane biogenesis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 682

 Score =  131 bits (330), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/135 (50%), Positives = 92/135 (68%), Gaps = 12/135 (8%)

Query: 1   VRELFPKLKSMEASFGEINGDAALTGHGNSIAAMLGTSNGEVGAVVSEGAVSKFILEAAG 60
           +++L+P+L +   SFGEINGDA L+  GNS+AAMLG+SNGEV  +V++GA+SKF+LEAAG
Sbjct: 464 IQKLYPQLDASRTSFGEINGDARLSATGNSVAAMLGSSNGEVKTLVTQGAISKFLLEAAG 523

Query: 61  LNIANAVFAKVFGDKPVHLNCMVGDMVVNNGRAEVRRFMLDTDDT------RVDITRAS- 113
           LN+ N V +K+FGDK V LNC+ GD+ V  G    R  MLDT+D        +D+ R   
Sbjct: 524 LNLGNVVISKLFGDKEVKLNCLAGDLPVREGIMTARTLMLDTEDALISVDGTIDMRREKL 583

Query: 114 ----HPDS-GMTMIS 123
               HP S G+ +IS
Sbjct: 584 DLHVHPKSKGLRIIS 598


>gi|300311615|ref|YP_003775707.1| outer membrane biogenesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 654

 Score =  117 bits (294), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/109 (49%), Positives = 82/109 (75%)

Query: 1   VRELFPKLKSMEASFGEINGDAALTGHGNSIAAMLGTSNGEVGAVVSEGAVSKFILEAAG 60
           VRELFP+L S++ASF + NG+A L+  GNS AA+L +++GE+ A +  G +S+FILEAAG
Sbjct: 459 VRELFPRLASLKASFSKFNGEATLSATGNSAAAVLASADGEIKADLGPGTISQFILEAAG 518

Query: 61  LNIANAVFAKVFGDKPVHLNCMVGDMVVNNGRAEVRRFMLDTDDTRVDI 109
           LN+ANAVFAK++ D+ V L C   D+ + +G+A +R  +L+T+D  +D+
Sbjct: 519 LNLANAVFAKLYRDQQVKLLCGAADVAIQHGQATIRHGILNTEDAAIDV 567


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 318,386
Number of extensions: 9363
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 126
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,264,745
Effective search space: 64501995
Effective search space used: 64501995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)