BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0004.p
         (351 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314078|ref|YP_003778170.1| uncharacterized protein involve...   206   3e-54
gi|300311615|ref|YP_003775707.1| outer membrane biogenesis prote...   171   9e-44

>gi|300314078|ref|YP_003778170.1| uncharacterized protein involved
           in outer membrane biogenesis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 682

 Score =  206 bits (523), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/322 (38%), Positives = 185/322 (57%), Gaps = 12/322 (3%)

Query: 1   MFAGLALLCAALLIAVATVDWNVARPWVSRKVVELTGREFAIGGNLKVGY----TLGLPT 56
           + A L LL  A +I + + DWN A+PW++ +V    GREFAI G+L + +    TL    
Sbjct: 11  LCASLILLITAAVIFILSFDWNRAKPWINERVSASIGREFAIDGDLSLHWQRAQTLPGAA 70

Query: 57  EPG-WRRYVPRLRITGDNVRFGNPSWASTGPNLATARRVSVALHPFPLLEHRVVLSDLVM 115
            PG W R++P  R+  + +R GNP   S    +AT  +V+  L+P PLL H + L  L +
Sbjct: 71  PPGFWERWLPWPRLQAEQLRIGNPPAFSQAGQMATIGQVTFTLNPLPLLVHDIALPSLDI 130

Query: 116 DTPMLALERDAQGRRSWRLRDPDR-PSPWRLEVLHSSFSNGDLVYVNRLLDLDLKAKVTS 174
             P ++L R+AQ   +W  +     PS W L +   +   G L   + +  + LKA++ +
Sbjct: 131 RDPSVSLLRNAQAVNNWTFKSSSAGPSAWNLRLGRITLRQGKLSLDDAVDKIKLKAEIDT 190

Query: 175 LDDANANKPAGGQRFGLQFNATGTYRKASVDGSGKAGGLLAFTAEHSAFPIQAQALIGKN 234
           LD      PA  + +GL +  +G++  A V G GKAGG+L+       +P+QAQ  +GK 
Sbjct: 191 LD------PAVEKIYGLGWKLSGSFNGAPVSGQGKAGGVLSLQNVQQPYPLQAQVRVGKT 244

Query: 235 KAGIDGIINDPRAPAGLDLQLTLSGDSMSDLYPVTGVLLPQTPAYETRGRLLGKKNDGIW 294
             G+ G +  P A A LDL+L++SG SM +LYP+TGVLLP+TP + T GRL+GK + G  
Sbjct: 245 AIGVHGTLTRPAALAALDLRLSVSGASMGNLYPLTGVLLPETPPFATEGRLIGKIDAGHS 304

Query: 295 LWTYEKFTGRVGESDLAGTAEY 316
            W YE F G+VG+SD+ G+  Y
Sbjct: 305 QWDYEDFRGKVGQSDINGSLRY 326


>gi|300311615|ref|YP_003775707.1| outer membrane biogenesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 654

 Score =  171 bits (433), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 155/303 (51%), Gaps = 7/303 (2%)

Query: 20  DWNVARPWVSRKVVELTGREFAIGGNLKVGYTLGLPTEPG--WRRYVPRLRITGDNVRFG 77
           DWN A+PW+ R++    GR+  + GNL + ++L    +      R  P+LR+  + +  G
Sbjct: 41  DWNSAKPWLGRQLSAALGRDIRVDGNLDLSWSLAQADDEAGALARLAPQLRLRAERLFIG 100

Query: 78  NPSWASTGPNLATARRVSVALHPFPLLEHRVVLSDLVMDTPMLALERDAQGRRSWRLRDP 137
           NP WA +  +L  A  + V   P PLL     ++DL ++   L +ER    R++WR    
Sbjct: 101 NPDWAHSSDHLVRAAALDVRFSPLPLLHWHWHVTDLRVEGLDLVMERADDQRKNWRFSSQ 160

Query: 138 DRPSPWRLEVLHSSFSNGDLVYVNRLLDLDLKAKVTSLDDANANKPAGGQRFGLQFNATG 197
            R S W  ++    F +  + YV   LDLDL+     L+ A A          LQ   TG
Sbjct: 161 PR-SRWSFDIHRIVFGHALIRYVELPLDLDLRFDARPLN-ATATNQKDSAALVLQAAVTG 218

Query: 198 TYRKASVDGSGKAGGLLAFTAEHSAFPIQAQALIGKNKAGIDGIINDPRAPAGLDLQLTL 257
            Y +A V+G  K G L     E S FP+QA+  IG  +  + G + +P   +  DL++ L
Sbjct: 219 RYGQAEVNGQIKGGALPDLLNEGSVFPLQAEGDIGGVQTQLSGNLINPHQLSRADLRIGL 278

Query: 258 SGDSMSDLYPVTGVLLPQTPAYETRGRLLGKKND---GIWLWTYEKFTGRVGESDLAGTA 314
           +GDS+  LYP TGV LP T A+ T G L   + D     W W Y  F+G+VGESD AG A
Sbjct: 279 AGDSLDRLYPATGVPLPATRAFHTEGALTITRLDPQTKAWDWRYSGFSGKVGESDFAGDA 338

Query: 315 EYL 317
           +Y+
Sbjct: 339 QYV 341


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,239,909
Number of extensions: 58003
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,212,660
Effective search space: 321354900
Effective search space used: 321354900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)