BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0001.p
         (120 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans...   142   1e-35
gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans...   135   1e-33
gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans...    82   1e-17
gi|300310662|ref|YP_003774754.1| aerotaxis sensor receptor trans...    63   7e-12

>gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor
          transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 554

 Score =  142 bits (357), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 69/78 (88%)

Query: 1  MRMNLPVTNAEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPD 60
          MR NLP+T  E  L+DGKSIVSKTDL+GNI YVNPYFIE+SGF EEEL+GAPQNIVRHP+
Sbjct: 1  MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60

Query: 61 MPAEAFADMWKTVKKGIP 78
          MP EAFADMW T+K+G+P
Sbjct: 61 MPREAFADMWATLKEGLP 78


>gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor
          transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 520

 Score =  135 bits (339), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/78 (78%), Positives = 68/78 (87%)

Query: 1  MRMNLPVTNAEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPD 60
          MRMN+PVT  E  L DGK+IVSKTDLKGNITYVNPYFIE+SGF E EL+GAPQN++RHPD
Sbjct: 1  MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60

Query: 61 MPAEAFADMWKTVKKGIP 78
          MPAEAFADMW T+K G P
Sbjct: 61 MPAEAFADMWATIKGGTP 78


>gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor
          transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 493

 Score = 82.0 bits (201), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 43/56 (76%)

Query: 21 VSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPDMPAEAFADMWKTVKKG 76
          +S TD    +TY N  F+EVSGFH E+L+G P NIVRHPDMP EAFADMW T+++G
Sbjct: 1  MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRG 56


>gi|300310662|ref|YP_003774754.1| aerotaxis sensor receptor
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 536

 Score = 62.8 bits (151), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 10  AEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPDMPAEAFADM 69
           A+  L + + ++++TD++G + YVN  F+  SG+  +EL+G P +++  PD P E  AD+
Sbjct: 24  ADMALGEDEYLITRTDIEGRMVYVNAAFVRRSGYAADELLGQPASMMYAPDTPPELGADL 83

Query: 70  WKTVK-----KGIPXQKGKNCTPTCARA 92
           W+TVK      G+   +GK+     ARA
Sbjct: 84  WRTVKARGAWTGVMRHRGKDGRCFWARA 111


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.125    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 286,459
Number of extensions: 10119
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 4
Length of query: 120
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,269,480
Effective search space: 58396080
Effective search space used: 58396080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)