BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0008.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312646|ref|YP_003776738.1| beta-lactamase class A protein ...   251   2e-68

>gi|300312646|ref|YP_003776738.1| beta-lactamase class A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  251 bits (642), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/174 (68%), Positives = 145/174 (83%)

Query: 16  SRLAKLEASVAGRLGVEILDSGTGRRWGYRADERFPMCSTFKFLAASAVLRRVDTGAEQL 75
           +RL++LEA + GRLGV +LD+ +GR WGYRADERFPMCSTFKFLAA+AVLRRVD G EQL
Sbjct: 41  ARLSRLEADIGGRLGVSLLDTASGRHWGYRADERFPMCSTFKFLAAAAVLRRVDQGQEQL 100

Query: 76  DRRIVYGEDVLVNYSPTTSKHVGGDGLSLAQLCEAAITLSDNTAANLILHSLGGLGPFNK 135
            RRIVY +  LV YSPTT KH GG GLS+AQLCEAA+TLSDNTAANL+L S+GG     +
Sbjct: 101 TRRIVYQKQDLVPYSPTTGKHTGGAGLSMAQLCEAAMTLSDNTAANLMLASMGGPAGLTR 160

Query: 136 FVRSLGDDTTRLDRFETELNTSIPGDPRDTTTPTAMTGNLQKVLLGDALSAASR 189
           FVR+LGD+ TRLDR E  LN ++PGDPRDTTTP AMT +L++++LG+AL+ ASR
Sbjct: 161 FVRTLGDELTRLDRNEPTLNEAVPGDPRDTTTPAAMTADLRQLVLGNALTPASR 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 593,156
Number of extensions: 24034
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)