BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0007.p
         (103 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312645|ref|YP_003776737.1| LysR family transcription regul...   139   4e-35
gi|300313964|ref|YP_003778056.1| LysR family transcription regul...    58   1e-10

>gi|300312645|ref|YP_003776737.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  139 bits (350), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 76/83 (91%)

Query: 1   VTQTAVSMQVKNLEERLGVTLFRRLPRGLALTDEGLALLPVLAESFERITTVLGQFENGQ 60
           VTQTAVSMQVKNLE+RLGV LFRRLPRGLALTDEGLALLPV+A+SF RI  VL QFE+G+
Sbjct: 29  VTQTAVSMQVKNLEQRLGVALFRRLPRGLALTDEGLALLPVVAQSFGRIADVLAQFEDGR 88

Query: 61  MREVLTLGAVGTFAVGWLMPRLR 83
            REVLT+G VGTFAVGWLMPRLR
Sbjct: 89  RREVLTVGVVGTFAVGWLMPRLR 111


>gi|300313964|ref|YP_003778056.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 58.2 bits (139), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 45/82 (54%)

Query: 1   VTQTAVSMQVKNLEERLGVTLFRRLPRGLALTDEGLALLPVLAESFERITTVLGQFENGQ 60
           VTQ+AVS QV+ LE  L   LF RL R + LT  G A    + ++FERI     Q    +
Sbjct: 31  VTQSAVSRQVRILEAHLEQKLFVRLTRRIELTRAGAAYFQQIRQAFERICAAGEQLHARR 90

Query: 61  MREVLTLGAVGTFAVGWLMPRL 82
            R  LT+G +   A  WL+PRL
Sbjct: 91  QRHTLTIGVLPGLASLWLVPRL 112


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 236,786
Number of extensions: 8595
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 32
Effective length of database: 1,283,685
Effective search space: 41077920
Effective search space used: 41077920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)