BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0003.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310704|ref|YP_003774796.1| major facilitator superfamily p...   111   9e-26

>gi|300310704|ref|YP_003774796.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 105/154 (68%), Gaps = 4/154 (2%)

Query: 110 GVLVAWLDRRPGVALLPTGAYQLSTAMGKVFACVCLLMIGSMTEIFVPYFLQILHGYAPL 169
           G  VA +D R  ++LLP   Y+LST MG VFAC+ LL++ S  EIFVPYFLQ LHGYAPL
Sbjct: 261 GAWVARIDLRHRISLLPRDGYRLSTVMGCVFACISLLVMASCVEIFVPYFLQSLHGYAPL 320

Query: 170 QAGYMTAAMAGGWSLASLLSSARSGKDADRMVRLGP---LVMTLSLLALVVLLPGDVDVA 226
            AGY  AAMAGGWS+ SL+ S RS + A RM+R+GP   L+  L+L AL+        V 
Sbjct: 321 AAGYAAAAMAGGWSVGSLVGSGRSAQAAARMIRMGPWLMLLGLLALAALLPASLLAAGVV 380

Query: 227 AEGLWLALALGGVGLGIGLGWPHLLTRVLKSARK 260
           A+ L + LAL   GLGIG+GWPHL+ R +++AR 
Sbjct: 381 ADVL-IVLALAAAGLGIGVGWPHLVARAMQAARP 413



 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 61/72 (84%)

Query: 10 SWSELLTGRNLLRSVALTGGVALHAINVHIVTTILPSVVRDIGGLAYYAWNITLFVVASI 69
          SW ELL  R+   +VALTGGVA+HAINVHIVTTILPSVVRDIGGL YYAWN+TLFVV SI
Sbjct: 23 SWGELLGRRHGWCAVALTGGVAMHAINVHIVTTILPSVVRDIGGLDYYAWNVTLFVVTSI 82

Query: 70 VGSALTSKLLDK 81
          +GS LT KLL +
Sbjct: 83 IGSTLTGKLLAR 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 852,499
Number of extensions: 26694
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)