BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0002.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312524|ref|YP_003776616.1| hypothetical protein Hsero_3227...    93   1e-20
gi|300310703|ref|YP_003774795.1| transcription regulator protein...    61   5e-11

>gi|300312524|ref|YP_003776616.1| hypothetical protein Hsero_3227
           [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score = 93.2 bits (230), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 70/117 (59%), Gaps = 5/117 (4%)

Query: 55  LALTMALSACAIQPAGERTTPTGQVPQARVYIKSMLSQSSGTAEVQFSRSKSFLSGNAPL 114
           + + +AL+ACA  P   + T +G +P  RVYIKSM  Q+ G + VQF R    L+ N  L
Sbjct: 12  ITVALALAACAT-PV--QRTASGDIPPPRVYIKSMTEQAEGLSRVQFQRPGGLLN-NDML 67

Query: 115 ELAINDVVLAQIESGEQLSIWLKPGTSYDFSVKPVHSLNSQTYPLTRKIRARARARA 171
           EL INDV LAQI  GE L+IWLKPG SYD   K VH+L + +     K+  + R  A
Sbjct: 68  ELTINDVTLAQIIGGEHLTIWLKPG-SYDLGAKRVHTLTNSSSSSEDKLTLQVRPGA 123


>gi|300310703|ref|YP_003774795.1| transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score = 61.2 bits (147), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query: 2  STAERILLRLKTRGPASTATLAQELAMTAEAARLQVQKLLAEELI 46
          STA+RILLRLKTRGPAS + LA EL M+AEAAR Q+QKL  + LI
Sbjct: 16 STADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLI 60


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.125    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 429,399
Number of extensions: 12717
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)