BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0191.0008.p
         (280 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309858|ref|YP_003773950.1| Na+-dependent transporter prote...   281   6e-77
gi|300312029|ref|YP_003776121.1| Na+-dependent transporter prote...   245   3e-66

>gi|300309858|ref|YP_003773950.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  281 bits (718), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 165/204 (80%), Positives = 184/204 (90%)

Query: 41  MHLASNTAIALLFFLHGARLSREAALSGFRQPRLHLLTLACTFVLFPLLGLTLQALFPGL 100
           MH+ASN AI+LLFFLHGA+LSREAAL+G +QPRLHLLTL  TF+LFPLLGL L+A+ P L
Sbjct: 1   MHVASNVAISLLFFLHGAKLSREAALAGLKQPRLHLLTLGSTFLLFPLLGLGLKAVAPDL 60

Query: 101 LTPELWLGVLFVCTLSSTVQSSIAFTSIARGNVPAAICGATASNLLGIVFTPILVTLLLH 160
           LTP+LW+GVLFVCTLSSTVQSSI FTSIARGNVPAAICGATASNLLGI+ TP+LVTLLLH
Sbjct: 61  LTPQLWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGILVTPLLVTLLLH 120

Query: 161 RHHDGGGLQQVSGILLQLLLPFVLGNVLRPWIGDWVLRKKGLLAVVDRGGILLAVYAAFS 220
           RHH+  GL QV  ILLQLLLPFVLGN+LRPWIGDW+ R K ++ VVDRGGILL+VYAAFS
Sbjct: 121 RHHEANGLSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFS 180

Query: 221 VAVAQGVWHLFPPQQLALLVLVNA 244
            AVAQG+WHLFPP QLALLVLVNA
Sbjct: 181 AAVAQGIWHLFPPGQLALLVLVNA 204


>gi|300312029|ref|YP_003776121.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  245 bits (625), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 160/236 (67%), Gaps = 2/236 (0%)

Query: 11  RYLPDTFTWMLLGAVLLATLLPATGRFEDFMHLASNTAIALLFFLHGARLSREAALSGFR 70
           R+LPD  T +LL  V+ A+LLP TG+  +     +   I LLFF+HGA+LSREA ++GF 
Sbjct: 5   RFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVVAGFT 64

Query: 71  QPRLHLLTLACTFVLFPLLGLTLQALFPGLLTPELWLGVLFVCTLSSTVQSSIAFTSIAR 130
             +LH+  L CTF LFPL+GL  + L    +TPEL+LG+LF+C L STVQSSIAFTS+AR
Sbjct: 65  HWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFTSVAR 124

Query: 131 GNVPAAICGATASNLLGIVFTPILVTLLLHRHHDGG--GLQQVSGILLQLLLPFVLGNVL 188
           GNVPAAIC A+ASNLLGI  TP+LV  L+  H   G   L  +  I+ QLLLPFV G + 
Sbjct: 125 GNVPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVAGQIA 184

Query: 189 RPWIGDWVLRKKGLLAVVDRGGILLAVYAAFSVAVAQGVWHLFPPQQLALLVLVNA 244
           RPWIG W+ R K  L  VD+  ILL VY AFS AV QG+WH  P   L  L+++NA
Sbjct: 185 RPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINA 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 680,913
Number of extensions: 24527
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,222,130
Effective search space: 239537480
Effective search space used: 239537480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)