BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0191.0003.p
         (450 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309860|ref|YP_003773952.1| hypothetical protein Hsero_0525...   536   e-153

>gi|300309860|ref|YP_003773952.1| hypothetical protein Hsero_0525
           [Herbaspirillum seropedicae SmR1]
          Length = 545

 Score =  536 bits (1380), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/453 (60%), Positives = 349/453 (77%), Gaps = 3/453 (0%)

Query: 1   MEAYLTLVPPQGGRARAVEVVNEIRAQGITQGILHEKLRGALATGHCSKLLIARGEDPVQ 60
           M A LTLVPP GGRA++VEVVN IRA GI+ GILHE LR AL+ G C+KL+IA+G  P  
Sbjct: 92  MTASLTLVPPYGGRAKSVEVVNAIRAAGISYGILHETLRHALSAGQCNKLVIAQGLMPTP 151

Query: 61  GEHARFEALLDQKEEELSEIDDDAVVHYADLGHLLLINVGDPLMRRTPPVPGVNGVNIKG 120
            E ARFE+LL++KEEEL++ID+DAVV YAD+GH+L ++VGDPLMRR PPVPG +G++I+G
Sbjct: 152 AEPARFESLLEEKEEELADIDEDAVVSYADMGHILQVSVGDPLMRRIPPVPGQDGIDIRG 211

Query: 121 QVVPALPVPDLGFNKDCVGAEPSKDDPDLLVAAIAGQPQLITNGVKINPIVEIEDVDLST 180
             VPA P+ D+GF K+CVGAEPS DDPDLL+A + GQP LI NGVK+NP++++E+VDLST
Sbjct: 212 GKVPARPIADIGFAKECVGAEPSPDDPDLLIAMVPGQPSLIKNGVKVNPVIDVENVDLST 271

Query: 181 GNVEFSGTVKIKGDVKTGMRLRVSGDVFVGGTVEAAEIIAGGNITVKGGIIGHAE---TQ 237
           GN+ F GTV++ GDV TGM+L V GDV V GTVEAAEI+AGG++TVKGG+IGH+E     
Sbjct: 272 GNLTFEGTVRVSGDVMTGMKLHVGGDVVVNGTVEAAEIVAGGSVTVKGGVIGHSEGVAAG 331

Query: 238 PGMASIVAKVKAEGSVQALFAESAHIEAGDSIMLAGNARQCEMLAGNEILVGKTNPKLGQ 297
            G  +I +++ ++ SVQ +FAESAHIEA D I++ GNAR CE+LAGNEI VGK NP+ G 
Sbjct: 332 AGTTAIASRISSQKSVQVMFAESAHIEAADDILVLGNARHCELLAGNEITVGKGNPRTGH 391

Query: 298 IIGGRAQATMLIKAVAFGSSSAATTKIQVGLDPYLEEKLRAKEQEFQRKLDDLNRVIKQL 357
           IIGGR +AT +I+A   G+ +AA T+IQVGLDPYLEEK+  KEQE+ RK+ +L+R IKQ 
Sbjct: 392 IIGGRVEATNIIRANVIGAPTAAHTRIQVGLDPYLEEKIAIKEQEYSRKVAELDRTIKQQ 451

Query: 358 AHYKQNPEKARNGAGEEAELNRKLLAQEVKDLVAEQNAMKEDLVAAESARIVAVKTVYEG 417
           ++YK NP+KA      E    RK LA EVK L+ E + MKE +VAAE ARI+  K V+EG
Sbjct: 452 SYYKLNPDKATPELLHETSDKRKALAYEVKVLLEEVSQMKEGMVAAEDARIIVAKAVHEG 511

Query: 418 VEMRIAKQVWQVLSDLGGGTAQLQGGKISFGGK 450
            E+RI  +VW V SDLGGGTAQL  G I +  K
Sbjct: 512 TELRIGHEVWPVQSDLGGGTAQLFEGDIRYNPK 544


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,434,944
Number of extensions: 61704
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,203,190
Effective search space: 435554780
Effective search space used: 435554780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)