BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0190.0026.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314043|ref|YP_003778135.1| cobalamin synthesis protein/P47...   207   2e-55
gi|300311859|ref|YP_003775951.1| CobW/P47K family protein [Herba...    92   2e-20
gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protei...    83   4e-18
gi|300311960|ref|YP_003776052.1| G3E family GTPase [Herbaspirill...    55   2e-09

>gi|300314043|ref|YP_003778135.1| cobalamin synthesis protein/P47K
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 388

 Score =  207 bits (526), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/116 (84%), Positives = 106/116 (91%), Gaps = 3/116 (2%)

Query: 4   MTPDTPA---LIPISLLTGFLGSGKTTLLNYLVAQPELKDTLVIINEFGEIGLDHLLVAH 60
           M P  PA    IP+SLLTGFLGSGKTTLLN+L+ QPE+KDTLVIINEFGEIGLDHLLVAH
Sbjct: 1   MNPSVPAGDAPIPVSLLTGFLGSGKTTLLNHLITQPEMKDTLVIINEFGEIGLDHLLVAH 60

Query: 61  SQDEVVVEMSSGCLCCTIRGDLKKTLKDITWRFAEGGKRKFNRVIIETTGLASPIP 116
           SQ+E +VEMSSGCLCCTIRGDLKKTLKDITWRFAEGG+RKFNRV+IETTGLASP P
Sbjct: 61  SQEETIVEMSSGCLCCTIRGDLKKTLKDITWRFAEGGRRKFNRVVIETTGLASPAP 116


>gi|300311859|ref|YP_003775951.1| CobW/P47K family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 404

 Score = 91.7 bits (226), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 74/111 (66%), Gaps = 12/111 (10%)

Query: 12  IPISLLTGFLGSGKTTLLNYLVAQPELKDTLVIINEFGEIGLDHLLVAHS------QDEV 65
           +P+++L+GFLG+GKTTLLN+++   E +   VI+N+  E+ +D  LV          +E 
Sbjct: 13  LPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGADLARTEEK 72

Query: 66  VVEMSSGCLCCTIRGDLKKTLKDITWRFAEGGKRKFNRVIIETTGLASPIP 116
           +VEMS+GC+CCT+R DL   ++ +        +R+F++++IE+TG++ P+P
Sbjct: 73  LVEMSNGCICCTLREDLLMEVRKL------ARERRFDQLVIESTGISEPLP 117


>gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protein
           [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score = 83.2 bits (204), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 13/111 (11%)

Query: 12  IPISLLTGFLGSGKTTLLNYLVAQPELKDTLVIINEFGEIGLD------HLLVAHSQDEV 65
           IP+++L+GFLGSGKTTLLN+++         VI+N+  E+ +D      +  +    DE 
Sbjct: 17  IPVTVLSGFLGSGKTTLLNHILRNRAGMKVAVIVNDMSEVNMDGDDVRRNTELYRGNDE- 75

Query: 66  VVEMSSGCLCCTIRGDLKKTLKDITWRFAEGGKRKFNRVIIETTGLASPIP 116
           +VEMS+GC+CCT+R DL + +  +    A  G  +F+ ++IE+TG++ PIP
Sbjct: 76  LVEMSNGCICCTLRADLLEQVSAL----ARSG--RFDYLLIESTGISEPIP 120


>gi|300311960|ref|YP_003776052.1| G3E family GTPase [Herbaspirillum
           seropedicae SmR1]
          Length = 377

 Score = 54.7 bits (130), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 1   MTKMTPDTPALIPISLLTGFLGSGKTTLLNYLVAQPELKDTLVIINEFGEIGLD-HLLVA 59
           + ++ P  P  IP++++TGFLG+GKTTLL  L+ + + +   ++INEFGE+ +D  LL A
Sbjct: 7   LPELAPALPP-IPVTVVTGFLGAGKTTLLRGLLQRRQSRRLALLINEFGEVAIDGDLLRA 65

Query: 60  HSQDEVVVEMSSGCLCCTIRGDLKKTLKDITWRFAEGGKRKFNRVIIETTGLASP 114
               +  V++          GD    +  +        + + + V+IET+GLA P
Sbjct: 66  EGDAQGQVQIQDFAHGLIAYGDDAHFVPAML--ALAARRAQIDHVLIETSGLALP 118


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 372,666
Number of extensions: 13389
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 4
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)