BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0190.0024.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum serope...   152   2e-38
gi|300309898|ref|YP_003773990.1| major facilitator superfamily p...    64   8e-12

>gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score =  152 bits (383), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/90 (86%), Positives = 87/90 (96%)

Query: 13  SGIAVLLVASLAIGLSATLAQDIVPAAATLAPEQSRGKVVGTVMTGLLLGILLSRVLSGF 72
           SG+  LL ASLA+GL+ATLAQDIVPAAA+LAPEQSRG+VVGTVMTGLLLGILLSRV+SGF
Sbjct: 112 SGVGALLAASLAVGLTATLAQDIVPAAASLAPEQSRGRVVGTVMTGLLLGILLSRVVSGF 171

Query: 73  VAEHFGWRSMFVAASVSIALIGIAAWRGLP 102
           VAEHFGWR+MFVAA+VSIALIG+AAWRGLP
Sbjct: 172 VAEHFGWRAMFVAAAVSIALIGLAAWRGLP 201


>gi|300309898|ref|YP_003773990.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score = 63.5 bits (153), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 7/119 (5%)

Query: 2   LTGALLLAGASSGIAVLLVASLAIGLSAT-LAQDIVPAAATLAPEQSRGKVVGTVMTGLL 60
           L  AL+  G +    VLL   LA+GL  T + Q ++  AA+ A E  RG+VVG   +G+ 
Sbjct: 86  LVCALVTVGLARSSYVLLAGMLAVGLLGTAMTQGLIAYAASAAGEDERGRVVGAAQSGVF 145

Query: 61  LGILLSRVLSGFVAEHFGWRSMFVAASVSIALIGIAAWRGLPLTGLADPDPAHADDRQF 119
           +G+LLSRV SG V++  GWR +++ A++ +  +    W+ LP        P  AD  ++
Sbjct: 146 IGLLLSRVFSGAVSDVTGWRGVYLCAAIMMLCLAWPLWKRLP------AIPVQADGLRY 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 339,972
Number of extensions: 10589
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)