BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0190.0014.p
         (616 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311830|ref|YP_003775922.1| isocitrate dehydrogenase [Herba...   808   0.0  

>gi|300311830|ref|YP_003775922.1| isocitrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 742

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/485 (78%), Positives = 427/485 (88%), Gaps = 2/485 (0%)

Query: 29  RGYAIPDLPEDPKTDEEKEILKSYSKVLGSAVNPVLREGNSDRRAPASIKRFARKHPHSM 88
           RGY +PD PE+P T+EEK + K Y+KV GSAVNPVLREGNSDRRAP ++K +ARKHPHSM
Sbjct: 105 RGYKLPDYPENPTTEEEKALQKRYAKVTGSAVNPVLREGNSDRRAPNAVKNYARKHPHSM 164

Query: 89  GEWSMASRSHVAHMKHGDFYHGEKSMTIG-AARVKMELVGKSGKTTVLKPKVALKAGEII 147
            +WSMASR+HVAHM  GDFY GEKS+T+  A  VKM+LV KSG+T VLKPK++L+AGEII
Sbjct: 165 AKWSMASRTHVAHMHGGDFYAGEKSLTLDKAVDVKMDLVTKSGETIVLKPKISLQAGEII 224

Query: 148 DSMFMSKKALCEFYEEQFEDARKTGVMLSLHVKATMMKVSHPIVFGHAVKIFYKEAFAKH 207
           DSMFMSKKALC +YEEQ +DA +T ++LS+HVKATMMKVSHPIVFGHAV+ +YK+ F KH
Sbjct: 225 DSMFMSKKALCAYYEEQMQDAFETDLLLSVHVKATMMKVSHPIVFGHAVRTYYKDTFTKH 284

Query: 208 GKLFDELGVNVNNGLVNLYEKIESLPSSKKEEIIRDLHACHEHRPSLAMVDSAKGISNLH 267
            KLF E+GVN NNG+  +YEKI +LP +KK E++ DL A    RP LAMVDSAKGI+NLH
Sbjct: 285 AKLFAEIGVNPNNGMSGVYEKINTLPDAKKAEVLADLKADEAKRPRLAMVDSAKGITNLH 344

Query: 268 APNDVIVDASMPAMIRIGGKMWDANGKPQDTKAVIPESTFARIYQEVINFCKTNGNFDPT 327
           APNDVIVDASMPAMIR GGKMW+A GK +DTKA++PESTFARIYQE+INFCKTNG FDPT
Sbjct: 345 APNDVIVDASMPAMIRAGGKMWNAAGKTEDTKALLPESTFARIYQEMINFCKTNGAFDPT 404

Query: 328 TMGTVPNVGLMAQKAEEYGSHDKTFEIAEDGVANIVDLATGEVLLTQNVEQGDIWRMCQV 387
           TMGTVPNVGLMAQKAEEYGSHDKTFEIA+ GVA IV L  G+VLL QNVE+GDIWRMCQV
Sbjct: 405 TMGTVPNVGLMAQKAEEYGSHDKTFEIAQAGVARIVTL-DGQVLLEQNVEEGDIWRMCQV 463

Query: 388 KDEPIRDWVKLAVTRARNSGMPAVFWLDPYRPHEAELIKKVETYLKDHDTKGLDIQIMSQ 447
           KD  +RDWVKLAVTRAR SGMPAVFWLDPYRPHEAELIKKV TYLKDHD  G DIQIMSQ
Sbjct: 464 KDAAVRDWVKLAVTRARLSGMPAVFWLDPYRPHEAELIKKVNTYLKDHDLTGADIQIMSQ 523

Query: 448 VRAMRYTLERVIRGLDTISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETG 507
           VRAMRYTLERVIRGLDTISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGM+ETG
Sbjct: 524 VRAMRYTLERVIRGLDTISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETG 583

Query: 508 AGGSA 512
           AGGSA
Sbjct: 584 AGGSA 588


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,838,066
Number of extensions: 72134
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 525
Effective length of database: 1,188,985
Effective search space: 624217125
Effective search space used: 624217125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)