BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0190.0008.p
         (104 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin...    71   2e-14
gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729...    66   5e-13
gi|300312677|ref|YP_003776769.1| two component hybrid sensor his...    57   3e-10

>gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 723

 Score = 70.9 bits (172), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 1   MSHEIRTPMNAVLGLTYLLEKTALQSDQRDLVRKIIVAGHSLLGIINDILDVSKIEAG 58
           MSHEIRTPMNAVLG+  LL  T L + Q +  + I  + H+LLGI+ND+LD SKI+ G
Sbjct: 94  MSHEIRTPMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVG 151


>gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729
           [Herbaspirillum seropedicae SmR1]
          Length = 765

 Score = 66.2 bits (160), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 41/58 (70%)

Query: 1   MSHEIRTPMNAVLGLTYLLEKTALQSDQRDLVRKIIVAGHSLLGIINDILDVSKIEAG 58
           +SHEIRTPMN +LGL+ LL ++ L S QRD    I  A   L+ IINDILD SKIE+G
Sbjct: 355 VSHEIRTPMNGILGLSELLMESGLSSKQRDYADSIHGATGGLVRIINDILDFSKIESG 412


>gi|300312677|ref|YP_003776769.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1160

 Score = 57.0 bits (136), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 7/73 (9%)

Query: 1   MSHEIRTPMNAVLGLTYLL---EKTALQSDQRDLVRKIIVAGHSLLGIINDILDVSKIEA 57
           MSHE+RTP+N+ L L  LL   ++  L  +Q    + I  AG+ LL +INDILD+SK+EA
Sbjct: 482 MSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEA 541

Query: 58  GP----PPGFSIT 66
           G     P  F +T
Sbjct: 542 GKLDIVPESFPLT 554


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 285,998
Number of extensions: 9797
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 4
Length of query: 104
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 33
Effective length of database: 1,283,685
Effective search space: 42361605
Effective search space used: 42361605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)