BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0190.0006.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...   102   1e-23
gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...    97   6e-22

>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score =  102 bits (254), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 1/148 (0%)

Query: 1   VRLTVNDVAQEARVDVRTSLLDYLRENLRLTGTKKGCDHGQCGACTVHVNGRRVNSCLSL 60
           +   VN V     +     LL+ LR +L L G K GC  G+CGACTV V+G    SC+  
Sbjct: 7   ITFHVNGVPVSLDIAADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVIP 66

Query: 61  VAMHEGDSITTIEGLGTPDRLHPLQAAFVAHDGLQCGYCTSGQIMSAAALLTEPCGRTDA 120
           +A      +TT++GL    RL P+Q AF+   G QCGYC +G IM+  ALL      ++ 
Sbjct: 67  LAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPSED 126

Query: 121 DVKEAMSGNICRCGAYSNIV-AAIRQVR 147
           +++  +  N+CRCG +  I+ AA+R V 
Sbjct: 127 EIRHELDFNLCRCGTHVEILRAALRAVE 154


>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 96.7 bits (239), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 82/141 (58%), Gaps = 13/141 (9%)

Query: 19  SLLDYLRENLRLTGTKKGCDHGQCGACTVHVNG--------RRVNSCLSLVAMHEGDSIT 70
           ++L +LRE+L  TGTK+GC  G CGACTV V          + VN+C+  +   +G ++ 
Sbjct: 27  TVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELQGEQLALKTVNACIQFLPTLDGRALF 86

Query: 71  TIEGLGTPD-RLHPLQAAFVAHDGLQCGYCTSGQIMSAAALLT--EPCGRTDA--DVKEA 125
           T+E L   D  LHP+Q A V   G QCG+CT G +MS   L    E  G T +  ++ +A
Sbjct: 87  TVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGFVMSLWGLYLRHEQDGVTPSKREIDDA 146

Query: 126 MSGNICRCGAYSNIVAAIRQV 146
           +SGN+CRC  Y  I+ A R++
Sbjct: 147 LSGNLCRCTGYRPIIDAARRM 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 437,599
Number of extensions: 16286
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)