BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0189.0004.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310006|ref|YP_003774098.1| pyruvate kinase II protein [Her...   491   e-140

>gi|300310006|ref|YP_003774098.1| pyruvate kinase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  491 bits (1264), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/259 (93%), Positives = 249/259 (96%)

Query: 1   MIAKIERAEAIPLLQEILDASDGIMVARGDLAVEVGNAAVPGLQKRMIKMARASNKLTIT 60
           MIAKIERAEAIPLLQEILDASDGIMVARGDLAVEVGNAAVPGLQKRMIKMARASNKLTIT
Sbjct: 219 MIAKIERAEAIPLLQEILDASDGIMVARGDLAVEVGNAAVPGLQKRMIKMARASNKLTIT 278

Query: 61  ATQMMESMIVNAVPTRAEVSDVANAVLDGTDAVMTSAETASGKYPVETVEAMSAICLAAE 120
           ATQMMESMIVNAVPTRAEVSDVANAVLDGTDAVMTSAETASGKYPVETVEAM AICL AE
Sbjct: 279 ATQMMESMIVNAVPTRAEVSDVANAVLDGTDAVMTSAETASGKYPVETVEAMHAICLEAE 338

Query: 121 KSEDCKLDADFLNLQFTRVDQSIAYGALFTAHHLRVKAIAALTESGSTALWMSRHNIDVP 180
           +SE+ +LDADFLNL+FTRVDQSIAYGALFTAHHLRVKAIAALTESGSTALWMSRHNID+P
Sbjct: 339 RSENVQLDADFLNLRFTRVDQSIAYGALFTAHHLRVKAIAALTESGSTALWMSRHNIDIP 398

Query: 181 IFAITPNVATRQKAALFRNVRTFELAQSTDTEVVLKAVQDLLLAQGVVQKGDLIVVTWGE 240
           IFAITPNVATR+KAALFRNV T ELAQ  DTE +LK  QDLLLAQGVVQKGDLIVVTWGE
Sbjct: 399 IFAITPNVATRRKAALFRNVHTLELAQCPDTEAMLKGAQDLLLAQGVVQKGDLIVVTWGE 458

Query: 241 PIGQVGGTNALKILKVGEY 259
           PIGQVGGTNALKIL+VGEY
Sbjct: 459 PIGQVGGTNALKILRVGEY 477


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 684,582
Number of extensions: 23941
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)