BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0189.0003.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310007|ref|YP_003774099.1| fructose-1,6-bisphosphate aldol...   339   1e-94

>gi|300310007|ref|YP_003774099.1| fructose-1,6-bisphosphate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 354

 Score =  339 bits (869), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/174 (94%), Positives = 169/174 (97%)

Query: 1   MPLVSMRQLLDHAAENGYGLPAFNVNNLEQVTAIMQAADEVGAPVIMQASAGARKYAGEA 60
           MPLVSMRQLLDHAAENGYGLPAFNVNNLEQVTAIM+AA+EVGAPVIMQASAGARKYAGEA
Sbjct: 1   MPLVSMRQLLDHAAENGYGLPAFNVNNLEQVTAIMEAANEVGAPVIMQASAGARKYAGEA 60

Query: 61  FLRHLIEAAVEAYPHIPVVMHQDHGQSPAVCMAAIKSGFTSVMMDGSLMEDGKSVASYEY 120
           FLRHLI AAVEAYPHIPVVMHQDHGQSPAVCMAAIKSGF+SVMMDGSL  DGK+VASYEY
Sbjct: 61  FLRHLISAAVEAYPHIPVVMHQDHGQSPAVCMAAIKSGFSSVMMDGSLEADGKTVASYEY 120

Query: 121 NVEVSRKVVEFSHAIGVTVEAELGVLGSLETMMGDKEDGHGADGKMTREQLLTD 174
           NVEVSRKVVEFSHAIGVTVEAELGVLGSLETM GDKEDGHGADG MTREQLLTD
Sbjct: 121 NVEVSRKVVEFSHAIGVTVEAELGVLGSLETMKGDKEDGHGADGTMTREQLLTD 174



 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 57/62 (91%)

Query: 176 LENPGKFDPRDYLKPAREAAKLVCKARYLSFGCEGQAGKIKAIPLEKIAEKYKKGELSQI 235
            ENP KFDPRDYLKPAREAAKLVCKAR+LSFGCEGQAGKIK I LEKIAEKYK GEL+QI
Sbjct: 293 FENPSKFDPRDYLKPAREAAKLVCKARFLSFGCEGQAGKIKPISLEKIAEKYKSGELAQI 352

Query: 236 VQ 237
           VQ
Sbjct: 353 VQ 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 741,627
Number of extensions: 29735
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)