BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0187.0030.p (203 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 294 4e-81 gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 92 2e-20 gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 92 4e-20 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 79 2e-16 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 294 bits (752), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 139/153 (90%), Positives = 146/153 (95%) Query: 1 LQPDSGLVKWAENASVGYMPQDPTEEFAKGEILTDWMGQWTQEGDDDQAVRSILGRLLFS 60 L PD GLVKWAENA+VGYMPQDPTEEFA GE LTDWMG+WTQEGDDDQAVR ILGRLLFS Sbjct: 371 LHPDGGLVKWAENANVGYMPQDPTEEFAGGETLTDWMGKWTQEGDDDQAVRGILGRLLFS 430 Query: 61 GDDVKKSVQVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAGTL 120 GDDVKKSV+VLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAGTL Sbjct: 431 GDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAGTL 490 Query: 121 IFVSHDREFVSSLATRILEVKENEIIDFRGSYE 153 IFVSHDREFVSSLATRILEVK+ ++IDF+G YE Sbjct: 491 IFVSHDREFVSSLATRILEVKDGQVIDFQGGYE 523 Score = 55.5 bits (132), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 52/95 (54%) Query: 74 GEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSL 133 G K R++ + + ++LL+DEPTN++D+ +I L L + T+I +SHDR F++ + Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQV 218 Query: 134 ATRILEVKENEIIDFRGSYEXGRLHPETDRRRHAA 168 T + ++ + + G+Y+ L R + A Sbjct: 219 CTHMADMDYGTLKIYPGNYDDYMLASSQARAQQLA 253 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Query: 3 PDSGLVKWAENASVGYMPQDPTEEFAKGEILTDWMG--QWTQEGDDDQAVRSILGRLLFS 60 PDSG V V + Q + K + D G G + R+ LGR F Sbjct: 375 PDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGADILTVGRFEMPSRAYLGRFNFK 434 Query: 61 GDDVKKSVQVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAGTL 120 G D +K V LSGGE+GR+ K +L NVLL+DEP+N +D+E++ +L AL ++AGT+ Sbjct: 435 GGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDEPSNDLDVETLRALEDALLEFAGTV 494 Query: 121 IFVSHDREFVSSLATRILEVK-ENEIIDFRGSYE 153 + +SHDR F+ +AT I+ + ++++ F G+Y+ Sbjct: 495 LVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQ 528 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 60/85 (70%) Query: 68 VQVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDR 127 + VLSGGEK R+ KL+L + ++LL+DEPTNH+D ES++ L L+++ GT++ ++HDR Sbjct: 160 IGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVDWLEQFLQRFPGTVVAITHDR 219 Query: 128 EFVSSLATRILEVKENEIIDFRGSY 152 F+ + A ILE+ I ++G+Y Sbjct: 220 YFLDNAAEWILELDRGHGIPWKGNY 244 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 5/155 (3%) Query: 1 LQPDSGLVKWAENASVGYMPQDPTEEFAKGEILTDWMGQWTQEGDD--DQAVRSILGRLL 58 + P SG + + +GY Q E E + T+ D +Q +R+ LG Sbjct: 376 IDPLSGTARLGKGLVIGYFAQHQVEMLRHDE---SPLWHLTRLAPDVREQELRNFLGSFN 432 Query: 59 FSGDDVKKSVQVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAG 118 F+G S+ SGGEK R+ ++ R N+LL+DEPTNH+D+E+ E+L +AL ++ G Sbjct: 433 FNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETREALTMALAQFEG 492 Query: 119 TLIFVSHDREFVSSLATRILEVKENEIIDFRGSYE 153 TL+ VSHDR + + + L V E ++ F G + Sbjct: 493 TLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLD 527 Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 68/111 (61%), Gaps = 4/111 (3%) Query: 46 DDQAVRSILGRLL----FSGDDVKKSVQVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHM 101 D VRS +LL FS + +++ V SGG + R+ + ++ ++LL+DEPTNH+ Sbjct: 125 DAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHL 184 Query: 102 DMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKENEIIDFRGSY 152 D+++I L L++Y GTL+ +SHDR+F+ + I+ + + ++ + G+Y Sbjct: 185 DLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNY 235 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 4/144 (2%) Query: 3 PDSGLVKWAENASVGYMPQDPTEEFAKGEILTDWMG---QWTQEGDDDQAVRSILGRLLF 59 PDSG VK V Y Q + + L D + W + + V + L LF Sbjct: 371 PDSGTVKQGTKMQVAYFDQ-MRAQLNEETTLADTIAPGSDWVEVNGQRKHVMTYLSDFLF 429 Query: 60 SGDDVKKSVQVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAGT 119 + + + V+ LSGGE+ R++ +L NVL++DEPTN +D++++E L LE+Y GT Sbjct: 430 APERARSPVRTLSGGERNRLLLARLFAKPANVLVLDEPTNDLDIDTLELLEELLEEYEGT 489 Query: 120 LIFVSHDREFVSSLATRILEVKEN 143 + VSHDR F+ ++ T+++ + N Sbjct: 490 VFLVSHDRMFLDNVVTQVIASEGN 513 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 56/82 (68%) Query: 71 LSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFV 130 LSGG K R+ ++G +VLL+DEPTNH+D SI L L + G+++F++HDR F+ Sbjct: 157 LSGGMKKRVALACGLVGNPDVLLLDEPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFL 216 Query: 131 SSLATRILEVKENEIIDFRGSY 152 +++TRI+E+ +I+ F G++ Sbjct: 217 DNVSTRIIELDRGKILSFPGNF 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 671,696 Number of extensions: 26412 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 283 Number of HSP's successfully gapped: 8 Length of query: 203 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 122 Effective length of database: 1,236,335 Effective search space: 150832870 Effective search space used: 150832870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)