BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0028.p
         (337 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311531|ref|YP_003775623.1| quinolinate synthetase A protei...   306   1e-84
gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp...   265   5e-72
gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp...    65   7e-12

>gi|300311531|ref|YP_003775623.1| quinolinate synthetase A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  306 bits (784), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/164 (90%), Positives = 155/164 (94%), Gaps = 1/164 (0%)

Query: 144 MQATAMKVVEFERPQMETGSSCTANAWARVPATPTADERHALKARIKQLLKEKQAVLVAH 203
           MQATA KVVEFERPQMETG SCTANAWA+VPATP+ +ER  LKARI+QLLKEKQAVLVAH
Sbjct: 1   MQATATKVVEFERPQMETGGSCTANAWAKVPATPSPEERAQLKARIRQLLKEKQAVLVAH 60

Query: 204 YYVDGDLQDLAEETGGCVSDSLEMARFGRDHAAQTLVVAGVRFMGETAKILSPEKRILMP 263
           YYVDGDLQDLAEETGGCVSDSLEMARFGRDHAAQTLVVAGVRFMGETAKILSPEKRILMP
Sbjct: 61  YYVDGDLQDLAEETGGCVSDSLEMARFGRDHAAQTLVVAGVRFMGETAKILSPEKRILMP 120

Query: 264 DLDATCSLDLGCPTDEFSAFCDAHPDRTVVVYANTSAAXARARA 307
           DL+ATCSLDLGCP DEF+AFCD HPDRTVVVYANTSAA  +ARA
Sbjct: 121 DLEATCSLDLGCPADEFAAFCDQHPDRTVVVYANTSAA-VKARA 163


>gi|300311530|ref|YP_003775622.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 532

 Score =  265 bits (676), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 122/131 (93%), Positives = 127/131 (96%)

Query: 1   MIIISHDRHFLNQVCTHMADMDYGTLKVYPGNYDEYMLASSQARAQQLSVNAKAKEKVAE 60
           MIIISHDRHFLNQVCTHMADMDYGTLK+YPGNYD+YMLASSQARAQQL+ NAKAKEKVAE
Sbjct: 205 MIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASSQARAQQLAANAKAKEKVAE 264

Query: 61  LQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPSSRANPFVRFEGEKKLHRLAVETQS 120
           LQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPSSR NPF+RFEGEKKLHRLAVETQ 
Sbjct: 265 LQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPSSRVNPFIRFEGEKKLHRLAVETQG 324

Query: 121 ISKTYDRPIFK 131
           I+KTYDR IFK
Sbjct: 325 ITKTYDRDIFK 335


>gi|300311473|ref|YP_003775565.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 660

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 10/106 (9%)

Query: 1   MIIISHDRHFLNQVCTHMADMDYGTLKVYPGNYDEYMLASSQARAQQLSVNAKAKEKV-- 58
           ++IISHDR FL+ V   +  +D   LK Y GNY  +     + R+ QL + A   EK   
Sbjct: 203 LLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAF----ERQRSAQLELMAGMIEKQQR 258

Query: 59  --AELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPSSRANPF 102
             A LQ F+ RF A  +KARQA SR K + K+  E++ P   A  F
Sbjct: 259 QRAHLQSFIDRFKAKATKARQAQSRMKALSKM--EELAPLRAAAEF 302


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 827,473
Number of extensions: 28357
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,212,660
Effective search space: 304377660
Effective search space used: 304377660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)