BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0024.p
         (431 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311533|ref|YP_003775625.1| transmembrane protein [Herbaspi...   347   1e-96

>gi|300311533|ref|YP_003775625.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  347 bits (890), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 213/424 (50%), Positives = 276/424 (65%), Gaps = 9/424 (2%)

Query: 1   VKSNNLTAPLLWAALYFVFGFVSHALNGSFVATGYIWLPAGITVSALLLTPTARWFPLLV 60
           V+SN L APL WAA YF+ G     L+G+  A G++WLPAGITV+AL LTP  RWF LLV
Sbjct: 23  VQSNELAAPLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLV 82

Query: 61  LLFAAQIFLGWLEHRELWRMALFCLDEIGVAAVAVWLVRRAPFPMEGLYFVRGLLMVGVG 120
           L+ AAQ+ LG LE RELWR+ L   +E GVAAVAV L+ R P P+ GL FVR LL+V  G
Sbjct: 83  LIIAAQVGLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGG 142

Query: 121 ASVVSGLFGAGWFAITQGTSFWPTLRVWALSDLVGILIMTPVLASWSQFRATRSGGIART 180
           ASV S L GAGW  +TQG  F  +LR+W  S+LVGIL++TP L            G+AR 
Sbjct: 143 ASVASALLGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARG 202

Query: 181 EFLLGLASFVAVIATAYLAFDSDLDRIIFDIDFSTTYLPLFFIALVALLWGGRGGALSVA 240
           EFL+GLA    ++AT YL+F+SDLDR + D++F+T+YLPL  +A++ L WG R GA +  
Sbjct: 203 EFLIGLACLAGMLATTYLSFNSDLDRRLLDVEFATSYLPLLLLAVLTLAWGARSGAWAAL 262

Query: 241 VLSLMAFVYNSLGRGPFVELVRLNSSNALLELQIYLAVASLLSLLISALKTTREQLHEDV 300
           +L+L+A VY++ G GPFV+LV+L++SNALLELQ+YL VA+LL+L + A KT R Q  ++ 
Sbjct: 263 LLALLAMVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEA 322

Query: 301 ARWKSNVELALTVSRQLVYSIDPAKKTVAWSGDITALLGLSPDKLTALDEVLKLVHPLDQ 360
            R +  + LAL  SRQ+ Y  D   +   W GD+  +LG+       LD+VL LV PLDQ
Sbjct: 323 ERSRRELHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQ 382

Query: 361 HRLRQRWLEDENGDSDEAR-EDMPFRLQLADGRSIGATDMSRSLRDPDGSLVMVAGTWHF 419
            RLRQRWL+ E    D AR   MP RLQ  DG ++   D SR L     +   V G W  
Sbjct: 383 ARLRQRWLDGE----DPARVVQMPVRLQ--DGSAV--LDRSRPLPRSRDAGPRVGGVWLI 434

Query: 420 NGAD 423
           + AD
Sbjct: 435 DPAD 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,359,482
Number of extensions: 56884
Number of successful extensions: 275
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,203,190
Effective search space: 412694170
Effective search space used: 412694170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)