BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0021.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane prote...   279   1e-76

>gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score =  279 bits (714), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/207 (65%), Positives = 171/207 (82%), Gaps = 3/207 (1%)

Query: 1   VLGNNRASLHSELRQPILGTSGIYLSPYVDLNRRYVDIYLDGSDAKASPATQYRIDTYTA 60
           VLG  RASL +ELRQPI G++G YLSPY++++RRYVD+Y DGSD KASP  +YRID+   
Sbjct: 472 VLGAKRASLQTELRQPIWGSTGAYLSPYLEVSRRYVDLYPDGSDVKASPINEYRIDSAQG 531

Query: 61  GVDLGMPLARLGEVRLGVNYQHNKYTPTYNLSDPSFGSL-YDTAQSNQPVARARLTIDQL 119
           G+DLG+PL+RLGE+RLG++YQH  Y+PTYNL  P+ G L +++ Q++QPVAR RLTIDQL
Sbjct: 532 GLDLGLPLSRLGELRLGLSYQHVNYSPTYNL--PAGGGLLFESVQTSQPVARLRLTIDQL 589

Query: 120 DDPLFPRKGYYLFAEAHRGFGKEDDRYSDAQFKSLWAFSHDRNTVNVALEAASNLSSNNP 179
           DD LFPRKGYYL AEA+RG G ++ R+S+ Q ++LWA S +RNT+NVALE AS+LS+N+ 
Sbjct: 590 DDALFPRKGYYLSAEANRGLGSDEHRFSNVQARTLWAVSRERNTLNVALEGASSLSANSA 649

Query: 180 GPGFFLGGFQRLSAYAADQFYGNYLLY 206
           G GF LGGFQ LSAYA DQF+GNYLLY
Sbjct: 650 GIGFTLGGFQHLSAYAPDQFFGNYLLY 676


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 637,861
Number of extensions: 26004
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)