BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0020.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane prote...   237   1e-63

>gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score =  237 bits (605), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/155 (73%), Positives = 131/155 (84%)

Query: 143 TSLCSTAXGARGYAHLGVLQYLEKLHVPVDYIAATSMGALVGGLYATGISAEDLENCLSQ 202
             L  +  GARGYAHLGVLQYLE+LH+P+D IA TSMGAL+GGLYA+G+ A +LE  L+ 
Sbjct: 44  VCLVLSGGGARGYAHLGVLQYLEQLHIPIDCIAGTSMGALIGGLYASGLDAGELERRLAA 103

Query: 203 TNLSDIAFDRNERAKLPQSQREDDFQYPISIAAGYDDGKLKLAPGLVQGNNLLTLLQNWT 262
           TNLSDIAFDRNER++LPQ+QRED+FQYPISI+AG D  KLKLA GLVQGN LL LLQNWT
Sbjct: 104 TNLSDIAFDRNERSRLPQAQREDEFQYPISISAGLDGSKLKLASGLVQGNKLLALLQNWT 163

Query: 263 AQLPANISFERLPIPFRAVATDLGKGTEVILERGS 297
           AQLPANI F RLPIPFRAVATDL  G+EV+L+ GS
Sbjct: 164 AQLPANIDFARLPIPFRAVATDLSLGSEVVLDHGS 198



 Score =  138 bits (347), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 87/111 (78%), Gaps = 3/111 (2%)

Query: 31  EAKPRPRAPRAXELSLPPAQWQAYLAAR-QTGAVLAHDTRVDAIEIKTTGRIPAAYVRSR 89
           EA  R +A R  +LSL P QWQAYL  R   G  LA  TR+DAIEI++  RIPA+YVRSR
Sbjct: 317 EAAQRQQA-RLLQLSLTPTQWQAYLDRRAHDGMALAAGTRIDAIEIRSGSRIPASYVRSR 375

Query: 90  LSVKEGDVYDADKINQQLSQLATNGDFNALTQEIVEK-DGRNVLLIDAEEK 139
           L+VKEGDVYD  +INQQLSQL+TNGDFN +TQE+V + DGR+VLLIDAEEK
Sbjct: 376 LAVKEGDVYDGQRINQQLSQLSTNGDFNNVTQELVSREDGRHVLLIDAEEK 426


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,106,902
Number of extensions: 44222
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)