BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0015.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311540|ref|YP_003775632.1| hypothetical protein Hsero_2225...   217   7e-58

>gi|300311540|ref|YP_003775632.1| hypothetical protein Hsero_2225
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  217 bits (552), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 124/145 (85%)

Query: 102 GRPRPATLKTTLGYVDSYIGEGQISYAGPGAQARGQLALDIVRQRLAIIDVKTDETRYDL 161
           GR RPATLKTTLGY DS+IGEGQISYAGPGAQAR QLA +IVR+RLA+  V+TDE R DL
Sbjct: 307 GRARPATLKTTLGYRDSFIGEGQISYAGPGAQARAQLAAEIVRERLALTGVETDELRLDL 366

Query: 162 IGVNAIHNGQQSASAVEPYEVRARVVGRTASMREAIRIGNEVETLYTCGPAGGGGVTKSA 221
           IG+NAI   Q SA A EPYEVR RV GRTASM++A+RIGNEVETLYT GPAGGGG TKSA
Sbjct: 367 IGMNAIAGPQMSAGAPEPYEVRLRVSGRTASMQQAVRIGNEVETLYTNGPAGGGGATKSA 426

Query: 222 KEIIAVLSALVPRELIHPAIHFEES 246
           +E+IAVLS L+PR L+HP++H EE+
Sbjct: 427 REVIAVLSLLLPRSLVHPSVHIEEA 451



 Score =  172 bits (436), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 100/137 (72%)

Query: 1   VXDGDYRIEDNGKPVKSLGDKLISANAYLGAQPIVDALKAGADVVITGRVADPALVLGPL 60
           V +GD+RIEDNG+PV SLG++LISANAYLG  PI++AL+AGADV+ITGRVADPALVL PL
Sbjct: 126 VQEGDFRIEDNGQPVSSLGERLISANAYLGVAPILEALQAGADVIITGRVADPALVLAPL 185

Query: 61  IHEFGWAMDDWPRLGQGTLAGHLLECAGQITGGYFSPPXASGRPRPATLKTTLGYVDSYI 120
           +HEFGWA DDW +LGQGTL GHLLECAGQITGGYF+ P        A L   +G V +  
Sbjct: 186 VHEFGWAADDWDKLGQGTLVGHLLECAGQITGGYFADPGKKDVAGLARLGFPIGEVSADG 245

Query: 121 GEGQISYAGPGAQARGQ 137
                  AG G Q   Q
Sbjct: 246 SAVITKVAGSGGQVTAQ 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 796,730
Number of extensions: 33251
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)