BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0012.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311541|ref|YP_003775633.1| H+/citrate symporter protein [H...   336   1e-93

>gi|300311541|ref|YP_003775633.1| H+/citrate symporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score =  336 bits (862), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 177/285 (62%), Positives = 213/285 (74%), Gaps = 21/285 (7%)

Query: 1   MLALLGFITIVVLLAAILTKKMSPLAALIAIPFIAALIGGFGLGTGKFMVDGIKSIAPIV 60
           MLALLGF+TIV L  AILTKKMSPL ALIAIP +AAL+GGFGL T KF+V G+ +IAP+ 
Sbjct: 1   MLALLGFVTIVSLFTAILTKKMSPLVALIAIPIVAALLGGFGLQTSKFIVQGVTAIAPVA 60

Query: 61  GMFVFAILFFGILKDAGMLDPIINKVLKVVGMRPSRIVLGSAVLAAIVHLDGSGAVTFLV 120
           GMFVFAILFFGI+ DAGMLDPII+++LK VG RP+RIV G+A+LA ++HLDGSGAVTFL+
Sbjct: 61  GMFVFAILFFGIVTDAGMLDPIISRILKTVGSRPTRIVPGTALLALLIHLDGSGAVTFLI 120

Query: 121 TIPALLPLYERLKMDKRILACVV------------------XAALHIPVADLYLPLIPVQ 162
           TIPA+LPLY RL +DKRILACV                    AALHIPV+D++ PLIPVQ
Sbjct: 121 TIPAMLPLYTRLGIDKRILACVTSMAAGVNFLPWTGPMIRASAALHIPVSDIFTPLIPVQ 180

Query: 163 ICGMLFVFTCAWLLGKKEERRLGLTAAASASDEITHHQQELSTEQLELRRPKLFVVNVVL 222
           + G+ FVF  ++LLG KEERRLGL   A+  D +  H  ELS  QL++RRP+ F  N+VL
Sbjct: 181 LVGLTFVFIASYLLGLKEERRLGLGKGATV-DFVQQH--ELSEAQLKIRRPQNFWANIVL 237

Query: 223 VLLVLGTMITGKVDPVACFMIGTVIALFINYPNVAQQRARARARA 267
            + VLG MI+GKVDPV  FMIG V+AL INY +V  QR R  A A
Sbjct: 238 TIFVLGVMISGKVDPVVMFMIGVVLALMINYRDVTMQRERIDAHA 282


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 761,601
Number of extensions: 27746
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)