BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0187.0011.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 513 e-147 gi|300310792|ref|YP_003774884.1| LysR family transcription regul... 139 2e-34 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 130 1e-31 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 98 8e-22 gi|300312482|ref|YP_003776574.1| LysR family transcription regul... 96 4e-21 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 513 bits (1320), Expect = e-147, Method: Compositional matrix adjust. Identities = 248/291 (85%), Positives = 270/291 (92%) Query: 1 MQANISTRLLQAFLMLNDCRHFGHAAQRCHVSQSAFSVMIQKLEAAAGARLFERDTRNVT 60 MQ NISTRLLQAFL L DCRHFGHAAQRCHVSQSAFS MIQK+EAAAGARLFERDTRNVT Sbjct: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 Query: 61 LTPEGELFVEVARQLMSDIEAAFSDMSDYVARRKGRVSIAALPSLAAGWLPPVIAMYRAQ 120 LTPEGELFV+VARQL+SDIEAAFSDMSDYVARRKGRV+IAALPSLAAGWLPPV+A YR + Sbjct: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 Query: 121 HPGVTVELFDAISDHCLNYLRQGKADIALTAPGPNLMEFDTQPLCEDPFYLVCRRDHKLA 180 +PGVTVELFDAISD CL+ LR GK DIALTAPGPNL+EFDT+PLC DPFYLVCR+DHKLA Sbjct: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 Query: 181 KKRVIRVEQLAGCELIHLARSTSVRQHLDTLLQPVGVINTGLEVEHLATVAGLIESGLGV 240 KR I+V QLAGCE+IHLARSTSVRQHLD +L+P GVI+TGLEVEHLATVA LIESGLGV Sbjct: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATVAALIESGLGV 240 Query: 241 SLVPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKARERSLSIAAQGLLELI 291 S+VPELTLFQFR PNLVAIPL+AP+L RPLLIV +ERSLS+AAQGLLEL+ Sbjct: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELV 291 >gi|300310792|ref|YP_003774884.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 150/290 (51%), Gaps = 5/290 (1%) Query: 1 MQANISTRLLQAFLMLNDCRHFGHAAQRCHVSQSAFSVMIQKLEAAAGARLFERDTRNVT 60 M+ NI T LQAF+ + F AA+ ++Q A S I+ LE A RLF+R TR V+ Sbjct: 1 MRINIETAELQAFIAVARQSSFRAAAEGLFITQPALSRRIENLEQALQERLFDRTTRRVS 60 Query: 61 LTPEGELFVEVARQLMSDIEAAFSDMSDYVARRKGRVSIAALPSLAAGWLPPVIAMYRAQ 120 LTP GELF+ A+ +M ++E A + +A+R+ V++A +PS+A LP V+ Y Sbjct: 61 LTPAGELFLVHAQAVMEELELAVKSVEQRMAQRREHVTVACVPSVANNLLPQVLKRYARS 120 Query: 121 HPGVTVELFDAISDHCLNYLRQGKADIALTAPGPNLMEFDTQPLCEDPFYLVCRRDHKLA 180 H V V + D + L +R+G+AD + G E D L + + V H LA Sbjct: 121 HANVRVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFAELTRERYLAVMPTHHPLA 180 Query: 181 KKRVIRVEQLAGCELIHLARSTSVRQHLDTLLQPV---GVINTGLEVEHLATVAGLIESG 237 + + LAG +L+ ++ S+ R +D V VI E H+A L+ +G Sbjct: 181 AHASLNWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQ--YETNHVAGAISLVAAG 238 Query: 238 LGVSLVPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKARERSLSIAAQGL 287 LGV+L+PEL + + +VA P+ +P L R + ++ + R L AA L Sbjct: 239 LGVALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATL 288 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 130 bits (327), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 155/283 (54%), Gaps = 1/283 (0%) Query: 10 LQAFLMLNDCRHFGHAAQRCHVSQSAFSVMIQKLEAAAGARLFERDTRNVTLTPEGELFV 69 +QAF+ + D F AA HV+Q+A ++ ++KLE G L ER TR++ LT G F+ Sbjct: 8 VQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTEIGRDFL 67 Query: 70 EVARQLMSDIEAAFSDMSDYVARRKGRVSIAALPSLAAGWLPPVIAMYRAQHPGVTVELF 129 AR+L++++ A ++ + R+G VSIA +P++ +LP ++ Y A++P +++ Sbjct: 68 PQARRLLAELAGALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYPHNRIKIL 127 Query: 130 DAISDHCLNYLRQGKADIALTAPGPNLMEFDTQPLCEDPFYLVCRRDHKLAKKRVIRVEQ 189 D S + + + + + G + E + L ED + L+C +DH LA++R I Q Sbjct: 128 DHASSAVAEAVLRREVEFGIHIAGEHHPELISVALTEDRYVLICPKDHPLARRRRIAWRQ 187 Query: 190 LAGCELIHLARSTSVRQHLDTLLQPVG-VINTGLEVEHLATVAGLIESGLGVSLVPELTL 248 L LI +S R LD L+ G + + EV+ +T GL+ G+GV++VP+L + Sbjct: 188 LQSYPLIFAGEVSSNRALLDPTLKANGFALRSFYEVQRSSTAVGLVAQGVGVAVVPKLAI 247 Query: 249 FQFRHPNLVAIPLNAPDLVRPLLIVKARERSLSIAAQGLLELI 291 + +P + I L P + R L+++ + LS AAQ L ++I Sbjct: 248 QEGAYPTVRVIELVDPVVSRSLVLITRKAAHLSPAAQALYDMI 290 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 97.8 bits (242), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 11/247 (4%) Query: 5 ISTRLLQAFLMLNDCRHFGHAAQRCHVSQSAFSVMIQKLEAAAGARLFERDTRNVTLTPE 64 I R L F + + HFG AA+ H+SQ + I LE GA+LF+R R + LT Sbjct: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 Query: 65 GELFVEVARQLMSDIEAAFSDMSDYVARRKGRVSIAALPSLAAGWLPPVIAMYRAQHPGV 124 G+ F ++ +E A ++S + G + + + S A LP V Y A +P V Sbjct: 62 GKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEV 121 Query: 125 TVELFDAISDHCLNYLRQGKADIALTAPGPNLMEFDTQPLCEDPFYLVCRRDHKLAKKRV 184 + L + + + + K D+ + + D+ + +P V RDH+LA ++ Sbjct: 122 DMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRQS 181 Query: 185 IRVEQLAGCELIHLARSTS------VRQHLDTL-LQPVGVINTGLEVEHLATVAGLIESG 237 I +LA I + R + ++QH +P V+ T L+ T+ L+ G Sbjct: 182 ISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQ----QTIVNLVGEG 237 Query: 238 LGVSLVP 244 LGV+LVP Sbjct: 238 LGVALVP 244 >gi|300312482|ref|YP_003776574.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 6/203 (2%) Query: 10 LQAFLMLNDCRHFGHAAQRCHVSQSAFSVMIQKLEAAAGARLFERDTRNVTLTPEGELFV 69 L+ FL + C A+QR +V+ SA S I LE LFER R + L+ GE+ Sbjct: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAGGEMLA 70 Query: 70 EVARQLMSDIEAAFSDMSDYVARRKGRVSIAALPSLAAGWLPPVIAMYRAQHPGVTVELF 129 AR++ + + +D+ R GRV ++A A +LP +I ++ ++PG +LF Sbjct: 71 AHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVFQLF 130 Query: 130 DAISDHCLNYLRQGKADIALT---APGPNLMEFDTQPLCEDPFYLVCRRDHKLAKKRVIR 186 +R+G ADI LT P P + QP P L+ R+DH LA+ R I Sbjct: 131 VGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQP---GPIALIMRKDHPLARFRQIS 187 Query: 187 VEQLAGCELIHLARSTSVRQHLD 209 V QL + +T++RQ D Sbjct: 188 VGQLKPYPMALPDPTTTLRQLFD 210 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 889,989 Number of extensions: 36283 Number of successful extensions: 279 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 64 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)