BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0004.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport tran...   195   1e-51
gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport tran...   110   4e-26
gi|300313118|ref|YP_003777210.1| proton glutamate symport protei...    57   7e-10

>gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  195 bits (496), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/104 (92%), Positives = 99/104 (95%)

Query: 1   MKAAPIGAFGAMAFTIGKYGVGSLLSLGKLMGTFYLTCLFFIFVILGIITRLHGFSVWKF 60
           MK APIGAFGAM+FTIGKYGVGSL SL KLMGTFYLTCL FIFV+LGIITRLHGFS+WKF
Sbjct: 196 MKVAPIGAFGAMSFTIGKYGVGSLFSLAKLMGTFYLTCLLFIFVVLGIITRLHGFSIWKF 255

Query: 61  VKYIKEELLIVLGTSSSESVLPRMLAKMENLGAKKTVVGLVIPT 104
           VKYIKEELLIVLGTSSSESVLPRMLAKMEN GAKKTVVGLVIPT
Sbjct: 256 VKYIKEELLIVLGTSSSESVLPRMLAKMENAGAKKTVVGLVIPT 299


>gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score =  110 bits (276), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 81/104 (77%)

Query: 1   MKAAPIGAFGAMAFTIGKYGVGSLLSLGKLMGTFYLTCLFFIFVILGIITRLHGFSVWKF 60
           ++ AP+G  GA+AFT+GKYG+GSL  L  L+  FY   +FF+ V+LG I R  G S++K 
Sbjct: 196 IRLAPLGVLGAIAFTVGKYGIGSLKQLALLVLLFYGAVIFFVLVVLGGILRASGLSIFKL 255

Query: 61  VKYIKEELLIVLGTSSSESVLPRMLAKMENLGAKKTVVGLVIPT 104
           ++Y++EEL++VL T+SS+SVLP+++ K+E++G KK+ VGLVIPT
Sbjct: 256 IRYLREELVVVLATTSSDSVLPQIMKKLEHMGIKKSTVGLVIPT 299


>gi|300313118|ref|YP_003777210.1| proton glutamate symport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score = 57.0 bits (136), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 10/108 (9%)

Query: 1   MKAAPIGAFGAMAFTIGKYGVGSLLSLGKLMGTFYLTCLFFIFVILGIITRLHGF----- 55
           MK AP+  F AMA T+   G+  L+S    M  FY     F  V+L +I    GF     
Sbjct: 195 MKFAPVAVFAAMAATVAVNGLEILVSFAVFMRDFY-----FSLVLLWVILIAVGFIFLKK 249

Query: 56  SVWKFVKYIKEELLIVLGTSSSESVLPRMLAKMENLGAKKTVVGLVIP 103
            ++  +  IKE  L+   T+SSE+  P++L  ++  G K+ +   V+P
Sbjct: 250 RIFHLLALIKEAFLLAFATASSEAAYPKLLDALDRFGVKRKISSFVMP 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.143    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 429,409
Number of extensions: 15142
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 3
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)