BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0187.0003.p
         (101 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport tran...   152   5e-39
gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport tran...    90   3e-20
gi|300313118|ref|YP_003777210.1| proton glutamate symport protei...    60   2e-11

>gi|300311930|ref|YP_003776022.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  152 bits (384), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/100 (82%), Positives = 93/100 (93%)

Query: 1   MKKVGKTGGLALLYFEVVSTLALIVGLILVNVLQPGAGMNIDASTIDTKSIAAYTAPGKM 60
           MKKVGKTGGLALLYFEVVST+ALI+GL+LVN LQPG GMN+D +++DTKSIAAYTAPGKM
Sbjct: 70  MKKVGKTGGLALLYFEVVSTVALIIGLLLVNFLQPGVGMNVDPASLDTKSIAAYTAPGKM 129

Query: 61  TSTTDFLMNIIPTSMFDAFAKGDVLQVLLISVLFGFALHK 100
            S TDF++ IIPTSM DAFAKGDVLQVLL++VLFGFALHK
Sbjct: 130 GSVTDFVLGIIPTSMVDAFAKGDVLQVLLVAVLFGFALHK 169


>gi|300313823|ref|YP_003777915.1| C4-dicarboxylate transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score = 90.1 bits (222), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 73/101 (72%), Gaps = 3/101 (2%)

Query: 1   MKKVGKTGGLALLYFEVVSTLALIVGLILVNVLQPGAGMNIDASTIDTKSIAAYTA-PGK 59
           +KKVG  G  A++YFEVV+T+AL++GL+L  V+QPGAGMNID S +D  S++ Y A  GK
Sbjct: 67  LKKVGSVGVKAIIYFEVVTTIALLLGLVLALVVQPGAGMNIDPSNLDASSLSGYMANAGK 126

Query: 60  MTST--TDFLMNIIPTSMFDAFAKGDVLQVLLISVLFGFAL 98
           +  T   +F+M +IP +   AF  GDVLQVLLISV FG AL
Sbjct: 127 VKETGFAEFIMKLIPATAVSAFTSGDVLQVLLISVTFGCAL 167


>gi|300313118|ref|YP_003777210.1| proton glutamate symport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score = 60.5 bits (145), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 5/97 (5%)

Query: 2   KKVGKTGGLALLYFEVVSTLALIVGLILVNVLQPGAGMNIDASTIDTKSIAAYTAPGKMT 61
           K VG+  G +L +F + S ++L +G+I+ N+LQPGAG+ + +      +  A  A  K T
Sbjct: 75  KSVGRIFGKSLAWFFIASLVSLALGMIMANLLQPGAGVALPSP----DAAGAGLATSKFT 130

Query: 62  STTDFLMNIIPTSMFDAFAKGDVLQVLLISVLFGFAL 98
              +F  +++P S+ +A A+ +VLQV++ S+ FG AL
Sbjct: 131 -VKEFFNHLVPKSIVEAMAQNEVLQVVVFSMFFGIAL 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 297,736
Number of extensions: 9955
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 1,619,870
Length adjustment: 70
Effective length of query: 31
Effective length of database: 1,288,420
Effective search space: 39941020
Effective search space used: 39941020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 123 (52.0 bits)